Coffea arabica (coffee): 113741688
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Entry
113741688 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like isoform X2
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113741688
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
113741688
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
113741688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_30
AAA_19
nSTAND3
DEXQc_Suv3
T2SSE
IstB_IS21
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
113741688
NCBI-ProteinID:
XP_027125087
UniProt:
A0A6P6XGC7
LinkDB
All DBs
Position
4e:39496572..39534804
Genome browser
AA seq
2092 aa
AA seq
DB search
MLLELPRLTNSLRDPFDVDQAYLHRKTILQNLKPPSSANSVQESQLARKIVYRWDDASNE
VRQVYKQFIGAVVELMGGEVVSEEFQEVALSVYKLFCTQLEDVEDDQVDKIIAEKKLDLQ
KLFGYEVPLSKLQRVLSLVKRLFELQKKDDGTVYIPEGQDKSADDMEFGADLVFRAPTRF
LVDVVLEDSDLFIEEATEIPNHGAWYELGDSATYIPSASGGNVDLEWLRDACDKIVSESI
SQLPRDELAMAICRVLDSEKPGDEIAGDLLDLVGDSAFEIVQDLIMHRKELLDAIHHGLF
VLKSDKKASNAQSRMPSYGTQVTVQTESERQFDKLRRKEEKKHRRGTDHGVENDLSAMTF
SSLLQASEKKGLFDDIIGRGDAHELPVTALPQGTIKKHYKGYEEVIIPPKPTAPMKPGEK
LIEIKELDDFAQAAFHGYKTLNRIQSRIFQTTYNTNENILVCAPTGAGKTNIAMIAILHE
IKHHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNIIVRELTGDMQLTKNELE
ETQMIVTTPEKWDVITRKSSDMSLSLLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQSMIRIVGLSATLPNYLEVAQFLRVNTETGLFFFDSSYRPVPLAQQYIGISEHNFLARV
ELLNEICYNKVVDSLKQGHQAMVFVHSRKDTRKTAEKLVELARKYEDLELFRNYSHPQFE
LKKREVLKSRNKDVVDLFENGIGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVN
LPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYL
RLLTSQLPIESQFIKSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGW
EEVIADPTLSMKQRALVADAARALDKAKMMRFDEKSGNIYCTELGRIASHFYIQYSSVET
YNELLRQHMNESEIIDMVAHSSEFENIVLRDEEQNELEMLARTSCPLEIKGGPSNKHGKV
SILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWSEMSSLMLDYCKAVD
RQIWPHQHPLRQFDKDISAEVLRKLEEKGADLDRLQEMQEKDIGALIRYAPGGRLVKQHL
GYFPSVLLSATVSPITRTVLKVDLIITPDFVWKDRFHGTALRWWILVEDSDNDHIYHSEL
FTLTKRMAKAEPYKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYTISFHNLALPEGRTS
HTELLDLKPLPVTALGNLTYEALYNFTHFNPIQTQAFHVLYHSNKNVLLGAPTGSGKTIS
AELAMLHLFNTQPDMKVIYIAPLKAIVRERMNDWRKHLVSRLGKQMVEMTGDYTPDMMAL
LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISS
QTEREVRFVGLSTALANAHDLADWLGVEENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM
NSMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLAMPEESLQM
ILSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIRVLVCTSTLAWGVNLPAH
LVVIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY
EPFPVESSLREQLHDHINAEIVAGTICHKEDAMHYLTWTYLFRRLMVNPAYYGLDDVEPG
NVSSYLSSLVQSTFEDLEDSGCIKINEDNVEPMMLGSIASQYYLRYTTVSMFGSNIGPDT
SLEVFLHILSGASEYDELPVRHNEENYNDGLSRRVRYMVDKNRLDDPHVKANLLFQAHFS
QLDLPISDYITDLKSVLDQSIRIIQAMIDVCANSGWLSSALTCMHLLQMVMQGLWYDKDS
SLWMLPCMTDDLISSLSRRGIAKIQQLLDTPSTVLQAIADNATASRLHQDLQHLPRIRVH
LKVERRNSDSNSSEISNGFNLNIRVEKTNTHHRTSRAFTPRFPKVKNEAWWLVLGDTSTS
ELYALKRVSFSDRLVTRMEIPSTQVNLQEMKLILVSDCYLGYEQEYPIEEIA
NT seq
6279 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggaacttccgcggttaacgaattctctccgcgatccttttgatgttgatcaa
gcgtatcttcatcgcaaaaccatcctccaaaacctcaaacctcccagttctgccaattca
gttcaagaatcgcaactcgctcggaagattgtatatagatgggatgatgcgtctaatgaa
gtgcggcaagtgtacaaacaatttattggagcggtggtggagttgatgggcggcgaagtg
gtgtcagaggagtttcaggaggtggctctgagtgtatataagcttttttgtacccaattg
gaggatgtggaagatgatcaagtggataagattattgctgagaagaaattagatttgcaa
aagctgttcggttatgaagttcctctttcaaagctgcaaagagtactctctttagtgaag
aggctttttgagttgcagaagaaggatgatggaactgtgtatataccagaagggcaagat
aagagtgctgatgatatggaatttggtgcagatctggtttttcgagcccccacacggttt
ctagttgatgttgtcttggaggacagtgatctgtttattgaggaggccactgaaattcca
aatcatggtgcatggtatgagcttggtgactcagcaacttacattccttctgcaagtgga
ggaaacgttgacttagagtggttaagggatgcttgtgataagatagttagtgaaagtatt
tcgcagctacctcgagatgaactggcaatggcaatttgccgagtacttgattccgagaaa
ccaggtgacgagatagctggagacttgctggatcttgttggtgatagtgcatttgaaatt
gttcaagatctcatcatgcataggaaggaacttctcgatgctattcatcatgggctattt
gtgctgaagtctgacaagaaggcttctaacgcgcagtctcgtatgcctagctatggcact
caggttacagttcaaacagagtctgaacgtcaatttgataaacttcgccggaaggaagag
aagaagcacagacgtggaactgatcatggagttgaaaatgatttatctgctatgacattt
agttccttactgcaagcaagtgagaaaaaagggctatttgatgatatcattgggagaggt
gatgctcatgagctaccagttactgcacttcctcaaggcaccattaagaagcattacaag
ggttatgaagaagtgatcattcctccaaagccaactgcaccaatgaaacctggagaaaaa
ctgattgagataaaggagttagatgacttcgctcaagctgctttccatggctacaagacc
ttgaatcgtattcagagtagaatattccagactacatataatacaaatgaaaacatactt
gtttgtgctccaacaggagctgggaaaacaaatatagccatgattgccattttacacgag
attaaacatcatttcagagatggttacttgcataaagatgaattcaagatagtgtatgtt
gctcctatgaaggcattagctgcagaggttacttcgacgtttagccatcgattgtctcca
ttgaatattattgtgagagaacttactggagatatgcaacttacaaaaaatgaacttgaa
gaaacacagatgatagtgacaacacctgagaagtgggatgttattactcgtaaaagcagt
gatatgtcgctgtcattgcttgtgaagctccttatcattgatgaagtgcatctattgaat
gatgatagaggtcccgtaatagaggcattagttgctcggactcttcgacaggtagagtcc
acacagagcatgatccgcatcgtaggcctttcagccactttaccaaactatttagaggtt
gcacaatttctaagggtcaatacagagacaggtctgtttttctttgattctagctatcga
ccagtacctcttgcccagcagtatattgggatcagtgagcataactttctggctcgtgtt
gaattgctgaatgagatatgctataataaggttgttgattctttaaagcaagggcatcag
gcaatggtttttgtccattcccggaaagacacaaggaaaacagctgagaaactggttgaa
ctggccaggaaatacgaggacttggaactttttaggaattattcacatcctcaatttgag
cttaaaaagagggaagttctcaagtccagaaataaggatgttgtggatctttttgaaaat
ggaattggtattcatcatgcggggatgttacgggctgataggggactcactgagcgactt
ttctcagatggacttttgaaggtacttgtatgcactgcaacactggcatggggagtaaat
ctgcctgctcacacggtggtgattaagggaactcaaatatatgatccaaaggccggtgga
tggcgagatttgggcatgcttgatgttatgcagatttttggacgtgcagggagacctcag
tttgacaaaagtggggaaggaattataatcaccacgcatgacaagttagcctattatttg
cgacttctaaccagccaactacccatagaaagtcagttcattaagtccttgaaggataat
ttaaatgctgaggtggcactgggcactgtgaccaatgtgaaggaggcttgtgcttggctt
ggatacacatatctgttcattagaatgaaaatgaatccccttgcatatggtattggatgg
gaggaggtgattgcagaccctacattgagcatgaagcagagagctcttgtagcagatgca
gcacgagctcttgataaagcaaaaatgatgcgtttcgatgagaaaagtggcaacatctat
tgcacagagctcggtcgtattgctagccatttttacatccagtactccagtgtggaaact
tacaatgagttgctaagacagcacatgaatgaaagcgagataattgatatggttgcccat
tcttctgaatttgaaaacatcgttctccgtgacgaggaacaaaatgagttagaaatgttg
gcccgcacttcatgtccattagaaattaagggaggtccatcaaataaacatggaaaagtc
tcaattcttattcagctgtacatctctcggggctccatcgattcattttcactagtttct
gatgcagcatatataagtgcaagcttggctcgtatcatgcgggctctatttgagatttgt
ttacgcagagggtggtctgagatgtcttcattaatgttagattattgtaaggcagtggat
cgccaaatttggccccatcaacaccctcttagacaatttgacaaggatatctcagcagag
gttttgaggaagctcgaagagaaaggggctgatttagatcgcctacaagagatgcaagag
aaagatattggagctttgatccgttatgcacctggtggaaggttggtcaagcaacacttg
ggatattttccttcagtcctgttgtctgctacagtaagtccaattacgagaactgttctc
aaggtggatttgattataacaccagattttgtgtggaaggatcgctttcatggcactgcc
ctaaggtggtggattctggttgaggattctgataatgaccacatttaccactctgagcta
tttacattgacaaaacggatggctaaagcggaaccttataagctatcttttaccgtgcca
atctttgagccacatcctcctcagtattacattcgtgcagtttctgactcctggttgcat
gcagaggcattctacactatatcctttcataatcttgccttgccagagggtcgcacatcc
catactgaacttttagatttgaaaccccttcctgtgactgcacttggcaatttaacttat
gaagctttgtacaactttacacatttcaatcctattcagacacaggcttttcatgtgctt
tatcattcgaacaaaaatgttctcttaggagctccaactggaagtggaaaaaccatatca
gctgaacttgctatgctccatctctttaacacccagcctgacatgaaggtcatctacata
gcacctctgaaggctatagttcgggaaaggatgaacgattggaggaagcatcttgtttct
cgacttggaaaacagatggttgaaatgacaggagactataccccggacatgatggctctt
ttatcagcagatattattatatctactcctgaaaagtgggatggtatcagtcgcaactgg
catagtcgaaattatgttaaaaaggttgggcttatgatattggatgagattcatttactt
ggagctgatcgtggacccattcttgaggtaattgtctcaagaatgagatatatatcatcc
caaacagagcgagaagttcgatttgtcggcctatcaactgcactagcaaatgcacatgat
ttagctgattggttgggcgtcgaagaaaatggtcttttcaatttcaagccaagtgtcagg
cctgttcctcttgaagttcatatccaggggtaccccgggaagttttactgcccaaggatg
aatagcatgaataaacccacatatgctgcaatatgtacgcattcacctaccaaaccagtt
ctcatatttgtatcatctcgtcgccaaacaaggcttacggcattagacctcatccaattt
gcagcttcagatgagcatccaaggcagttcttggctatgccagaagaatctcttcagatg
atcctttcacaggtcacagatcagaacttgaggcacactttacagtttggcattgggttg
catcatgcaggtctaaatgataaggacagatctctggtggaggaactttttgcaaataac
aagatccgggttttagtttgtactagtacattagcatggggtgtaaatcttcctgctcat
ttggttgttattaagggcacagaatattatgatggaaaagcaaaaagatatgttgatttt
cccatcacggatattttacagatgatgggtcgagcaggtcgaccacaatatgatcaacat
gggaaagctgtcattcttgttcatgaaccaaaaaagagcttctacaagaagtttctatat
gaaccatttccagttgaaagcagtctgagagagcagttgcatgatcacatcaatgctgaa
atagttgctggaacaatttgtcataaggaggatgcaatgcactatctcacctggacttac
ttgttccgaagactgatggtgaaccctgcttattacggcctggatgatgtagaaccagga
aatgttagttcttatttatcaagcttagtgcaaagcacgtttgaagatttggaagacagt
ggatgcattaagatcaatgaagataatgtggagccaatgatgttaggatcaatagcgtcc
cagtattatctcagatacacaactgtgtcgatgtttggttctaacatagggccagacacc
tcccttgaagtcttcctgcatatattatctggtgcttcagagtatgatgagcttcctgtg
cggcataatgaggaaaattataatgatggattgtcccgaagagtacgatatatggtggac
aaaaatcgacttgatgatcctcatgtgaaagcaaatcttctttttcaggcacatttttca
caattggatctaccaatcagtgattacattactgacttaaagtctgtgcttgatcaaagt
atacgcatcatccaggccatgatagacgtatgtgctaacagtggatggctctcgagtgcc
ctgacttgcatgcatctattgcaaatggttatgcagggtttatggtatgataaagattct
tctttgtggatgttgccatgcatgactgatgatctgattagttcattgagccgaagaggc
attgcaaagattcagcaattgttggacactccctccacagttctacaggctattgctgac
aatgctacggcctcaagactacatcaggatctacagcatttgcctcgtattcgagtgcat
ttgaaagttgagagaaggaattctgatagcaattcatctgagatttccaatggttttaat
ctgaacatcagagtagaaaaaacaaatacccatcatagaacatcaagggcttttactcct
cggtttcccaaggtaaaaaatgaagcatggtggttggttcttggtgacacttctacctct
gaattatatgctttgaagagggtgtctttctcagatcgtttggtgacacgcatggagata
ccatcaactcaagtcaacttgcaggagatgaagctgattctggtttcagattgttatttg
gggtatgaacaagagtatcccattgaagaaattgcttaa
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integrated database retrieval system
