KEGG   Coffea arabica (coffee): 113741923
Entry
113741923         CDS       T11342                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
carb  Coffea arabica (coffee)
Pathway
carb03013  Nucleocytoplasmic transport
carb04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    113741923
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    113741923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113741923
   04131 Membrane trafficking [BR:carb04131]
    113741923
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     113741923
Membrane trafficking [BR:carb04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    113741923
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    113741923
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    113741923
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_Vps41 Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 WD40_Gbeta Beta-prop_WDR19_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_WDR36-Utp21_2nd Beta-prop_SCAP WD40_RFWD3 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 113741923
NCBI-ProteinID: XP_027125385
UniProt: A0A6P6XCB0
LinkDB
Position
4e
AA seq 299 aa
MPGQKIETGHQDTVHDVAMDYYGKRLATASSDNTIKIIGVSNSNSQPLATLSGHQGPVWQ
VAWAHPKFGSLVASCSYDGKVIIWREGNQNEWSQAHLFGDHKASVNSIAWAPHELGLCLA
CGSSDGNISIFTARSDGSWDTSQIDQAHPVGVTSVSWAPSTAPGALVGSGVLDPVQKLAS
GGCDNAVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGRVIIW
TVMKEGDQWEGKVLKDFKTPVWRVSWSLTGNILAVADGSNNVTLWKEEVDGEWQQVTTV
NT seq 900 nt   +upstreamnt  +downstreamnt
atgccaggacaaaagattgagactggtcaccaggatacagttcatgatgtggcaatggac
tactatggcaagcgtcttgcaacagcttcttcagataacaccattaagataattggtgtt
agtaactcaaactcgcagcctcttgcaactctaagcggtcaccaaggaccagtatggcaa
gtagcatgggcacaccccaagtttgggtcccttgttgcgtcatgctcctatgatggaaaa
gtcataatatggagggaagggaatcagaatgagtggagccaggcccatcttttcggtgac
cataaagcttctgtgaattctattgcatgggctcctcatgagctgggcctttgtttggca
tgtggttcctcagatgggaacatatcaatttttactgcgaggtctgatggcagttgggat
acatcccagattgaccaggctcacccggttggcgttacctccgtctcgtgggcaccatca
acagctcccggtgctcttgtaggttctggtgtgctcgatcctgttcagaagcttgcctct
ggaggatgtgataatgcggtgaaagtgtggaagctttataacggaatctggaagatggac
tgcttcccagctcttcaaatgcataccgattgggtaagagatgttgcatgggcacccaat
ttgggactcccaaagtcaacaattgctagtgcttctcaagatggaagagttatcatatgg
accgtgatgaaggagggtgatcaatgggagggtaaagttttgaaggatttcaagacccct
gtttggagagtctcatggtcactgacaggaaatatacttgccgtggcagatggcagtaac
aacgtgacattgtggaaggaagaagtggatggagagtggcagcaggtgacaacagtttga

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