Coffea arabica (coffee): 113741971
Help
Entry
113741971 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113741971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113741971
03009 Ribosome biogenesis [BR:
carb03009
]
113741971
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113741971
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113741971
Complex B
113741971
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113741971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113741971
NCBI-ProteinID:
XP_027125445
UniProt:
A0A6P6XEW2
LinkDB
All DBs
Position
4e:1635542..1640680
Genome browser
AA seq
505 aa
AA seq
DB search
MSRYDSRSADPGSYRDRRSDSGFGGSSNYRSTTTTTSRRHNDVADSPRKSELDGLTPFEK
NFYVEAPSVAAMSEGEVEEYRRRREITVEGRDVPNPVKSFQDVGFPDYVMQEIERAGFSE
PTPIQAQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT
RELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH
TNLRRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLYWSATWPKEVEQLARQFLFN
AYKVIIGSADLKANHAIRQNVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKNPIMTATDVAARGLDVKDVKYVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKDLINILQEAGQKVSPELASMGRGA
PPPPAAHGSFRDRGRGYGGGGRPWS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgctccgccgaccccggctcataccgagaccgccggagtgat
tcaggtttcggagggagctcgaactaccggtcgacgacgaccacaacgagtaggagacac
aatgatgttgcggattcgccgcgaaaatcggagttggacgggttgactccgttcgagaag
aatttctacgtggaggcgccatctgtcgccgcaatgtcggagggtgaggtggaggagtac
agaaggcggcgggaaataactgttgaaggccgggatgtccccaacccggttaagagtttc
caagacgtaggttttccagattatgtcatgcaagagattgaaagagctggcttttctgaa
cctacacctattcaagctcagggatggcctatggctttgaggggccgtgatctcataggt
attgcagaaactggatcagggaagacattagcgtatctattgcctgcaattgtgcatgtt
aatgctcagccgtttttagcacctggagatggtccaattgttttagttttagctccaact
cgtgaacttgctgttcagattcaacaagaagctactaaatttggtgcttcatcaaggatt
aagaatacctgcatttatggtggggttcctaagggacctcaagttcgtgatcttcagaaa
ggtgttgaaattgttattgctacacctggacggttgattgatatgctggaatctcatcat
acaaacctgcgaagggttacatatcttgtgttggatgaggcagatcggatgctagatatg
ggctttgaacctcagattcgaaaacttgtttctcagattcgtccagaccgtcagactctt
tactggagtgctacatggcccaaggaagttgagcaacttgcaaggcaatttcttttcaat
gcatacaaagtgatcataggttcagcagatttgaaggctaaccatgcaattcgtcagaat
gtggacatcgtctctgagagtcagaaatacaataaattagtgaagttgctagaggacatt
atggatggtagccgaatattgatattcatggacactaaaaaggggtgtgatcaaatcact
cgacaacttagaatggatggttggcctgcactatctattcatggagataagagtcaagca
gaaagagattgggttctctctgaattcaaagctggcaagaatccgataatgacagcaact
gatgttgctgctcgaggtctagacgtgaaggatgtcaagtatgttatcaattatgacttt
cctggatctctcgaagattatgtccaccgcattggacgaactggaagggctggtgccaaa
gggacggcatatacattcttcacagttgccaatgcgagatttgcaaaggacctcatcaac
atccttcaggaggctggacagaaagttagtcctgagctggcatctatgggacgtggtgca
cctcctcctccagcagcccatgggagttttcgagatcgggggaggggttacggcggagga
ggtcggccttggagctga
DBGET
integrated database retrieval system
