Coffea arabica (coffee): 113742145
Help
Entry
113742145 CDS
T11342
Name
(RefSeq) oligouridylate-binding protein 1B
KO
K13201
nucleolysin TIA-1/TIAR
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113742145
03041 Spliceosome [BR:
carb03041
]
113742145
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
113742145
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
113742145
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_PARP14_3
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
113742145
NCBI-ProteinID:
XP_027125672
UniProt:
A0A6P6XI40
LinkDB
All DBs
Position
4c:complement(872374..877209)
Genome browser
AA seq
423 aa
AA seq
DB search
MQHQRLKQQQHQALMQHALLQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGN
IHTQVTEPLIQEVFSSTGPVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQP
IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSR
GYGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGANDDKQSSDAKSVVELTTGS
SEDGKEAANNDAPENNPQFTTVYVGNLAPEATQLDLHRHFHALGAGVIEEVRVQRDKGFG
FVRYSTHAEAALAIQMGNTQSILCGKPIKCSWGNKPTPPGTSSNPLPPPAPAPLPGLSAT
DLLAYERQLAMSKMGGVHALMHSQGQHPLKQASMGLGAAGASQAIYDGGFQNVAAAQQLM
YYQ
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatcagaggctgaagcaacagcaacaccaggcgctgatgcaacacgcgcttctt
cagcagcagtctctctatcaccctggtcttttagctgctcctcagattgagccaattcca
agtggaaatttgcctcctggttttgatccaagtacatgccgcagcgtgtatgtaggaaac
atccatacccaagtgactgaaccactcattcaggaagttttctcgagtacaggtcctgtt
gaaggttgtaaacttattaggaaagaaaagtcatcctatggatttattcattattatgat
cgtagatctgctgcacttgctatattgtctcttaatgggaggcatctgtttgggcagcca
attaaagttaattgggcatacgccagtggtcaaagggaggatacatcaggtcacttcaac
atttttgttggtgatcttagccctgaggttactgatgccatgctgtttgcttgtttttca
gtttaccctagttgctctgatgcaagggttatgtgggatcagaagacaggccgttcaagg
ggttatggatttgtatcttttaggaatcagcaggatgcgcagagtgcaataaatgactta
acaggaaaatggcttggcagtagacagatacgttgtaattgggctactaaaggtgctggt
gctaatgatgataagcagagttctgatgctaagagtgttgtggaactgacaactggttca
tcagaggatgggaaggaggcagcaaataatgatgctccagagaataatccacaatttacc
actgtgtatgtgggcaatcttgctccagaggcaacccaacttgatcttcaccggcacttc
catgctttgggtgctggagtgattgaggaagtcagggttcagcgtgacaaaggatttggc
tttgtaagatacagcacccatgccgaggcagctttggcgattcaaatgggcaatacccag
tcaattctttgtgggaaaccaattaagtgttcatggggaaacaagccaactccaccagga
actagctcaaatccacttccgccaccggctcctgcacccttgccaggcctttcagctact
gacctcttggcctatgaacggcaactagctatgagcaagatgggtggtgtccatgccctc
atgcactctcaagggcaacatcccctgaagcaagcatctatggggttgggtgctgctgga
gctagccaagcaatatacgatggggggttccaaaatgttgcagctgcacagcagcttatg
tactaccagtga
DBGET
integrated database retrieval system
