KEGG   Coffea arabica (coffee): 113742203
Entry
113742203         CDS       T11342                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03030  DNA replication
carb03410  Base excision repair
carb03420  Nucleotide excision repair
carb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113742203
   03410 Base excision repair
    113742203
   03420 Nucleotide excision repair
    113742203
   03430 Mismatch repair
    113742203
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:carb03032]
    113742203
   03400 DNA repair and recombination proteins [BR:carb03400]
    113742203
Enzymes [BR:carb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113742203
    6.5.1.6  DNA ligase (ATP or NAD+)
     113742203
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113742203
DNA replication proteins [BR:carb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    113742203
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     113742203
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113742203
   NER (nucleotide excision repair)
    Other NER factors
     113742203
   MMR (mismatch excision repair)
    Other MMR factors
     113742203
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 113742203
NCBI-ProteinID: XP_071932642
UniProt: A0ABM4WLI5
LinkDB
Position
1c:51721868..51731240
AA seq 801 aa
MFTAFRSCSSSLHFTHHTLSLHPLRKPLGFKPYFLVYSSFPAKPFSQRSLFLLIPLVNPG
SIAAMASRPSAFDLLMSNASKKKSEQKQQKPSPKKRKTTTPTITSQNSAPISVKEPDSAQ
IKEAQLEKDMKNDDSSNFKDAQLGKSEEAVVKKPKVVITPDESLLELKDKATSFDPKKAA
YWGKGQRVPFMFVAKALDAISKESGRIAITAIVCNMLRTVMETTPEDLVAVVYLLANRIA
PAHEGLELGIGDASIIKALSEACGTKEAQIKKQYKELGDLGLVAKASRSSQSLMRKPEAL
TVVKVFDTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGLAEQTL
LAALGHAAVYADKQSSTPANIDSSLEEAAKIVKQVYSVIPVYDKIIPALLADGVWDLPKT
CSFSPGVPVGPMLAKPTKGVSEILDKFQDIEFTCEYKYDGERAQIHYMEDGTVEIYSRNA
ERNTGKYPDVVDAISRFKRPSVTSFVLDCEIVAFDREKKKILPFQVLSTRARKNVVLSEI
KVGVCIYAFDILYINGQPLLQAQLDSRRQHLYESFEEGPGFFQFATAVTSNDLEEIQKFL
EAAVDASCEGLIIKTLKKDATYEPSKRSNNWLKLKKDYMDSTGDSLDLVPIAAFHGRGKR
TGVYGAFLLACYDVNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKPKSYYRYSDTIN
PDVWFEPIEVWEVKAADLTISPVHRAATGIVDSDKGISLRFPRLLRVREDKNPEDASSAD
MVADMYRAQKHNQSNRDDDEQ
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgttcacagcattcaggtcatgctcttcttcactccactttacccaccacactctttcg
cttcatcccctcagaaaaccactcggctttaagccctactttctcgtctattcttccttc
cccgcaaaacccttctctcagagatccctctttctcttgattccattagttaacccagga
tcaatagcagcaatggcttctcgcccttctgccttcgacctcctcatgtccaatgccagc
aagaaaaagtccgagcagaaacaacaaaaaccatctcccaagaaacgcaaaaccaccacc
cccaccatcacttctcaaaattctgctccgatttcagtcaaagaacctgattcagctcaa
attaaagaagcccaactggaaaaagatatgaaaaatgacgattcgagcaactttaaggat
gcccagctggggaaaagtgaggaagcggtggttaagaaacctaaggtggtaattactcct
gatgagagccttcttgagttgaaggataaggcgacaagttttgatcccaagaaggcggca
tattggggaaagggacaaagggtgccgtttatgtttgtagcgaaggcgttggatgctatt
tctaaagaatcagggcggattgcgataactgcaattgtttgtaacatgttgaggactgtg
atggaaacgacgccagaggatttggtggctgttgtttaccttttggcgaaccggattgct
ccagcccatgaaggattggagcttgggattggggatgcttcgattattaaggctctgtcc
gaggcgtgcggaacaaaagaagcacaaattaagaagcagtacaaggagcttggtgatcta
ggccttgttgcaaaagcaagccgttcgtctcagtctttaatgcgcaaaccagaagcacta
actgttgttaaagtttttgatacatttcgccttattgctaaggaatctggtaaggatagt
caagagaagaaaaagaatcatatcaaggcactactggttgctgctactgattgtgaacct
cagtacttgattcgtctgctccaggcgaaactgcgcattggtttagctgagcaaactctg
ttagctgctttgggccatgctgcagtttatgctgataagcaatcttcaactcctgcaaat
atagattcttctttagaagaggctgctaaaatcgtgaaacaagtttactcggtaattcca
gtctatgataaaataatccctgctcttcttgctgatggtgtatgggatcttcccaagaca
tgtagcttttcacctggtgttcctgttggacctatgctagcaaaaccaactaagggagtt
tctgaaatattggataagtttcaggatattgaattcacctgtgaatacaagtatgatgga
gaacgtgctcagattcactacatggaggatggtacagtggagatatatagtcgaaatgca
gaaagaaacacgggaaagtatcctgatgttgtggatgcaatttcaaggtttaaaaggccg
tctgtaacctcatttgttcttgattgtgaaattgttgcatttgatcgtgagaagaaaaaa
attctccccttccaggtcctcagcacacgggctcgtaaaaatgtggtcttgagtgaaata
aaggttggtgtttgcatatatgcttttgatatcttgtatatcaatggccaacctcttcta
caagcacagcttgacagtcgaaggcagcatctttacgagtcatttgaggaaggacctggc
ttttttcaatttgctacagcagtaacatcaaatgatcttgaggaaatacagaagttcctt
gaagctgctgttgatgccagttgtgaggggttgataattaagacattgaagaaagatgcc
acgtatgagccttccaagcggtcaaataactggctgaagttgaaaaaggattacatggat
agtacgggtgactcactggatttggttcccattgctgctttccatggccggggaaaacgt
actggtgtttatggagcctttctccttgcttgttatgatgtcaacaacgaagaattccag
agcatatgtaaaattggcactggattttctgaagctgtgcttgaagagcgctctgccagc
ttgcgctctaaagttattcccaagccaaagtcttattaccggtactcagatacaatcaat
ccagatgtatggtttgaacctattgaggtttgggaggtaaaagctgctgatctgactatc
agtcctgttcatcgtgctgctactggtattgtggattcagacaagggaatttctcttcgg
tttccacgtttactacgggttcgagaagataagaatccagaggatgcctcttctgctgat
atggtggcagatatgtatagagctcagaaacacaatcaaagtaaccgcgatgatgatgag
caataa

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