Coffea arabica (coffee): 113742303
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Entry
113742303 CDS
T11342
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113742303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113742303
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113742303
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113742303
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
T2SSE
TRI4_N
SRP54
AAA_16
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
113742303
NCBI-ProteinID:
XP_027125919
UniProt:
A0A6P6XF97
LinkDB
All DBs
Position
4e:complement(41558477..41573460)
Genome browser
AA seq
1051 aa
AA seq
DB search
MGDLRAWVSDKLMSLLGYSQPTVVQYVISITKKASSPAEVVNTLVELGLSSSRETQAFAQ
QVFARVEHKASGPSLYQQREREAAMLVRKQRAYTLIEADDEEDDAGGSVGNKSASMATQS
RKEDNRNKKFRKRAEPQEDDEGDDEEVGNGKEERSVRRRTSKDDSDGSESEEERLRDQRE
REELERNIRERDAAGTRKLTEQKLTKKEEEEAIRRSQALENDEIETLRKVSRQEYLKKRE
QKKLEELRDDIEDEQYLFDGVKLTEAEYRDLRYKKEIYELVKKRTQDADDVNEYRMPEAY
DQEGGVNQEKRFSVALQRYRDPNAAEKMNPFAEQEAWEEHQIGKATLKFGSKNRKQKSDE
YQFVFEDQIEFIKDTIMDGENVDQESSIEELNKSIAKSAFDKLQDDRKTLPVYPYRDELL
QAINDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSQEMG
VKLGHEVGYSIRFEDCTSETTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTD
ILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEAD
YLDAAIVTALQIHVTQPPADGDILVFLTGQEEIETAEEILKQRTRGLGTKIAELIICPIY
ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMES
LLVTPVSKASANQRAGRSGRTGPGKCFRLYTAHNYQYDLEDNTVPEIQRTNLANVVLTLK
SLGIHDLLNFDFMDPPPAEALLKALELLYALGALNKLGELTKVGRRMAEFPLDPMLSKMI
VASDKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSS
WKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVTSNVNDLEAIKKAITSGF
FPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPE
WLVEIAPHYYQLKDVEDSTSKKMPRGEGRTS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggggacctgagggcatgggtctcggataagttgatgtctcttctcggatattcacag
cctacagttgttcaatatgtcattagtataactaaaaaggcttcatcgcctgcagaagtt
gtgaatacgcttgtagaactggggttatcatcttctagagaaactcaggcatttgcacaa
caagtttttgctcgagtggagcataaggcttctgggccaagtctttatcagcaaagagag
agagaggcagcaatgttggtcaggaagcagagggcttatacgctcatagaagctgatgat
gaggaggatgatgctggaggttcagttggcaataagtctgcttctatggccacccaatcc
cggaaagaagataaccgtaataaaaagttcaggaagagggctgagcctcaggaagatgat
gagggtgatgacgaggaagtgggaaatgggaaagaagaaagatctgtgagaagacggact
tccaaggatgatagtgacggttctgagtcagaagaagaaagattgcgtgatcaaagagaa
agggaggaactggagcggaacattagagaaagggatgcagcagggaccagaaagttgact
gagcaaaaattaacaaaaaaggaggaagaagaggcaatccggaggtcacaagcattggag
aatgatgaaattgaaactctgagaaaagtttcaaggcaagaatatttgaagaaaagagag
caaaagaagcttgaggaactcagagatgatattgaagatgagcaatacttatttgatggt
gtgaagcttactgaagcagaataccgtgatctaagatacaagaaagaaatatatgagctt
gtcaagaagcggactcaggatgctgacgacgttaatgagtataggatgcctgaagcctac
gaccaagaaggtggcgtaaatcaagagaagaggttttctgttgctctgcagcgttacagg
gatccaaatgctgcagaaaaaatgaatccatttgctgaacaagaagcatgggaggaacat
cagataggaaaggcaactctaaaatttgggtcaaaaaatcgaaagcaaaaatctgatgag
tatcaatttgtttttgaagaccaaattgagttcataaaggatacaataatggatggtgaa
aatgttgatcaagagtcttccattgaggaactcaacaaatctattgccaaatcagcattt
gacaaacttcaggatgataggaaaacgttgcctgtgtatccatacagagatgaattgctt
caagctattaatgatcatcaggttctcgttattgttggagaaactggttctggaaagact
actcagatacctcaatatcttcatgaggcaggctataccaagcgcggaaagatcggatgt
acccagccacgtcgagttgctgctatgagtgttgctgctcgagtttctcaggagatggga
gtcaagcttgggcacgaggttggttactctattcgttttgaagactgtacatcagagaca
acagttttgaagtacatgacggatggaatgttgctgcgggaattcctgggtgaacccgat
cttgctagttacagtgtggtgatggtggatgaggcccatgaaagaacattgtcaactgat
attctgtttggcttggtcaaggatattgctcgatttcgtcctgatctcaagttgcttatt
tcaagtgccactctggatgctgagaaattcagtgactacttcgattctgctccaattttt
aaaattccaggacggcgatttcctgttgagatacattatactaaggcaccagaggctgat
tacttggatgcagcaattgtcacagcccttcagattcatgttacacaaccacctgctgat
ggtgatatactggtattcttaactgggcaggaggaaattgaaacggctgaggagattttg
aaacaaagaacaagaggattgggtacaaaaatagcggagttgattatatgcccaatatac
gccaatctaccaacagaactgcaggccaaaatatttgagccaacacctgaaggggcacgc
aaagttgttcttgcaacaaatattgcagagacttcattgacaattgatggaataaaatac
gttattgatcctggattttgtaagatgaagtcttataaccctcgcacaggaatggagtca
ttactggtcactcctgtctctaaagcgtcagcaaatcaacgggcaggtcgatctggacga
actggtcccgggaagtgcttccggttatatacagcacataattaccagtatgacttggaa
gataatactgttcctgagatacaaaggacaaacctggctaatgttgtgcttacactcaag
agccttggcattcatgacttgttaaactttgactttatggacccaccaccggctgaggcc
ttattgaaagccctggaattgctgtacgcattaggtgcactgaataagcttggtgagttg
acaaaggtgggaagaagaatggctgagttccctcttgatcctatgctgtcaaagatgatt
gttgcttctgacaagtacaaatgttcggacgagataatttctattgcagcaatgctttct
attgggaattcaattttttaccgtccaaaagataaacaagttcatgccgacaatgcacgg
ttgaattttcacatgggtaatgttggagatcatattgcactgcttaaggtgtacagttct
tggaaggaaaccaacttttcaactcaatggtgctatgagaattatatccaagtcagaagc
atgaagcgtgctagagacataagagatcagttggaggggctattggaaagggttgagatt
gaagtgacatccaatgtcaatgatttggaagctataaagaaggctataacatcaggcttt
ttcccccactctgcaaggttgcaaaagaatggatcatatcgaactgtcaaacatccgcag
actgttcatattcacccgagttcaggtttagctcaggtgcttccaagatgggttgtgtac
catgaactggtgttgacaaccaaagagtacatgcggcaggtaaccgaactaaaaccagaa
tggctggtagaaatagctcctcactattaccagttgaaggatgttgaagactctacatca
aagaaaatgcctcgtggagaaggccgcacatcgtag
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integrated database retrieval system
