Coffea arabica (coffee): 113742559
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Entry
113742559 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113742559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113742559
03009 Ribosome biogenesis [BR:
carb03009
]
113742559
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113742559
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113742559
Complex B
113742559
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113742559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113742559
NCBI-ProteinID:
XP_027126220
UniProt:
A0A6P6XEV5
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Position
4e:10593883..10600233
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AA seq
625 aa
AA seq
DB search
MFNPYDSRYTDAASYRNRRSDIMGAAPPIVPPPMMGSGGLGPSYDRGGPPPPYGGPMGAP
PPVVDGGRGVGGSGGGYGGLGDRRGDFRGRGFDSGRSGGRSGGSGRGGSDAGRGGGMGFR
GGHGGGRGGFDGGRGGGSSGRGGRHGSRPRDDLDNLALPKQEFGNLVPFEKNFYVESPSV
RAMTEQEVAVYRARREMTVDGHDVPKPIRMFHEANFPDYCLEVIARLGFVEPTPIQSQGW
PMALKGRDLIGIAETGSGKTLAYMLPALVHVSAQPRLAQGDGPIVLVLAPTRELAVQIQE
EAMKFGSRIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLKRVTYLVL
DEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVEALARQFLRNPYKVIIGSAEL
KANQSIRQIIEIVTDVEKYTRLIRLLKEVMDGSRILIFVETKKGCDQVTRQLRMDGWPAL
SIHGDKSQDERDWVLADFKSGRNPIMIATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRI
GRTGRAGATGTAFTFFTHANGKFARDLIKILRDAGQIIPPDLSAMARSTGSTMGGNNFRS
RGRGGFGNRGISGSNTIPLGARKPW
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatccttacgattccagatatactgatgctgcctcttatcgtaaccgtcgcagt
gatattatgggggcagcgcctccaattgttccaccgcctatgatgggtagtggtggttta
ggcccgagttatgaccgtggtgggcctcctcctccgtatggtgggcctatgggggcaccg
ccacctgtggtggatggtggtagaggggtcggaggcagtggtggtggctatggtggttta
ggagatagaaggggtgattttagaggtagggggtttgattcgggacgtagtggaggtagg
agtggtggcagtggaaggggtggttccgatgctgggaggggtggtggaatgggttttcga
ggtgggcatgggggaggaaggggtggttttgatggaggacggggtggtggtagtagtgga
agaggtggtagacatggtagtaggccaagagatgacctagataatcttgctcttccaaag
caagaatttgggaacttggttccttttgagaagaacttttatgttgagagtccttcagtg
agggcaatgaccgagcaagaggttgcagtttatcgtgccagacgggagatgactgttgat
ggccatgatgttccaaagccaataaggatgtttcatgaggcaaactttcctgattattgc
cttgaggtgattgctagattaggttttgttgagccaacacctattcagtctcaaggttgg
cccatggccttgaaaggtagagatcttataggcattgctgagactggttctgggaagact
ttggcttatatgttgcctgctttggtacatgtcagtgcgcagccgcgattggcacaagga
gacggtcccattgtgctagtactagcacctacaagagaattggctgttcagatccaagaa
gaagcaatgaaatttggatcccgtataagaagtacttgcatctatggtggtgccccaaaa
ggaccacaaatccgtgatcttaaaagaggagttgaaattgttattgccactccgggtaga
ttgatagatatgctggaggctcaacatacaaatttgaaaagagtaacttacctcgtacta
gatgaggctgatcgaatgcttgatatgggatttgagcctcaaattaggaaaattgtttca
cagattagaccagatagacaaactttgtattggagtgccacatggccaagggaggtagaa
gctttagcaaggcagtttttgcgcaatccttacaaggtgatcattggttctgcagaactg
aaagcaaatcaatctatacggcagatcattgaaatagtgacagatgtggagaagtacact
aggctgattaggctgctgaaagaagtgatggacggaagtcgtattcttatatttgtggag
acaaagaaaggatgtgatcaagtgacaagacaattgagaatggatggatggccagcctta
tccatccatggtgataaaagccaggatgaaagggactgggtcctggctgattttaaaagt
ggcagaaatcctataatgattgccactgatgttgctgcacgtggtcttgatgttaaggac
ataaaatgtgtggttaactatgattttccatcaagccttgaggattacgttcataggatt
ggccgaactggtcgtgcaggagctacaggaactgctttcacttttttcactcatgcaaat
ggcaagtttgccagagatctaatcaagatattacgggatgcaggccaaatcattcctcct
gatttgtctgcgatggccaggtctactggttctactatgggaggaaacaactttcgctcc
agaggacgtgggggttttggcaacagaggtatctctggatccaacacaatacctcttggt
gctaggaagccatggtag
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