KEGG   Coffea arabica (coffee): 113742906
Entry
113742906         CDS       T11342                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03082  ATP-dependent chromatin remodeling
carb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    113742906
   03083 Polycomb repressive complex
    113742906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:carb03036]
    113742906
Enzymes [BR:carb01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     113742906
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     113742906
   HDAC complexes
    Sin3A-HDAC complex
     113742906
    BRAF-HDAC complex
     113742906
    REST complex
     113742906
    SHIP complex
     113742906
    MiDAC complex
     113742906
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     113742906
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    113742906
  Chromatin remodeling factors
   NuRD complex
    113742906
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 113742906
NCBI-ProteinID: XP_027126724
UniProt: A0A6P6XHQ9
LinkDB
Position
4e:10662389..10667970
AA seq 457 aa
MDSSDAGGASLASGPDGTKRRVTYFYEPNIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHR
KMEINRPFPAKRDDIRRFHSQEYVDFLSSVTPVTVHDHTHSRHLKRFNVGEDCPVFDGLF
EFCQASAGGSIGAAVKLNRQDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVH
RRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDLGVGQGKYYALNVP
LNDGMDDGSFRDLFRPVIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGIEPDNNLPYNEYYEYFGPDYTLHVEP
SLMENKNSARDLERIRNMLLEQLTKLTHAPSVQFQTTPPITEAPEVAEQSMDQRPQPRIW
NGENYESDSDEDEKPRHRSINSNVTPMTDADMRDISD
NT seq 1374 nt   +upstreamnt  +downstreamnt
atggactcctccgacgccggcggtgcctctctggcttcaggtcccgacggaactaagcgg
cgcgtgacatatttctacgagccgaacataggcgactactactatggacaaggccacccc
atgaaaccccaccgcattcgcatggcccacaatctcatcgtccactactctcttcaccgg
aaaatggaaatcaaccgccccttcccggccaagcgagacgacatccgccgcttccattct
caggaatacgtcgacttcctctccagtgttacgccggtcactgttcacgaccatacccac
tcgcgtcatctcaagaggttcaatgtcggcgaggactgccctgttttcgacgggcttttt
gagttttgtcaggcatccgccggcggatcgattggcgccgccgttaaactcaaccggcaa
gatgctgatatagccatcaattgggctggtggacttcatcatgctaagaaaagtgaggct
tctggtttttgttatgtcaatgacattgttcttggcatcctcgagctcctcaaagtccac
aggcgtgtattatatatagatattgacatccaccacggagatggtgttgaggaggcattt
ttcaccactgacagagtaatgactgtgtctttccataaatttggggactttttccctggt
acggggcacattaaagatcttggggtgggtcaggggaagtactatgcccttaatgtccca
ttaaatgatggaatggatgatgggagtttccgtgatttattccgtcctgtcatccaaaag
gttatggaggtctatcagcccgatgcagttgttcttcaatgtggagcagattccctggct
ggcgacaggttgggttgcttcaacttatctgttaaaggtcatgcagactgcctacgtttc
cttagatctttcaatgtccctttaatggttctaggtgggggaggttatacaattcgcaat
gttgcacgctgctggtgctatgagacagcagttgcagttggcatagaacctgataataac
ttaccttacaatgagtattacgagtactttggcccagattacactcttcatgtggaacca
agcctcatggagaacaaaaattcagcccgggatttggaaagaatcaggaatatgttactt
gagcagcttacaaaattgactcatgcaccaagtgtacaattccaaacaacacctcccatt
acagaagctccggaagtggctgagcaaagcatggatcaaaggccacaacctcggatctgg
aatggtgaaaattatgaatctgatagtgatgaagatgaaaagcctcgacaccgtagcata
aatagcaatgttacaccaatgacagatgctgacatgagggatatatctgattaa

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