KEGG   Coffea arabica (coffee): 113742964
Entry
113742964         CDS       T11342                                 
Name
(RefSeq) UBP1-associated protein 2B
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113742964
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113742964
   03041 Spliceosome [BR:carb03041]
    113742964
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     113742964
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113742964
Spliceosome [BR:carb03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    113742964
SSDB
Motif
Pfam: RRM_1 RRM_7 WHD_MCM6 Cut8 FAM76
Other DBs
NCBI-GeneID: 113742964
NCBI-ProteinID: XP_071901992
UniProt: A0ABM4U3X9
LinkDB
Position
4c:8500446..8503290
AA seq 444 aa
MAGKRKADDENSSSEDTSSSSSSEEEDSSSSGSGSESSSSCEEEEGEGVQNNRNDSSERQ
KVVIISDEEEEVQNNDDESSKKEKLRELLEPLSKDQILGYLKEEALKDPSILSRIVEKAE
SDPTHRKIFIHGLAWDATEDQLLQVFEPFGEVEELKLITDKVTGRAKGYAFLLFKTRAAA
KSALNNPQKKIGNRTVSCQLAVLGPAAGSAPAGQAAEVSKRKLFVANVGPNANVERLRAF
FGKFGEIEDGPLGLDPSTNKPRGYAIFVYKSVDGLNKALEQPAKLFEGSQLNCKKFVEGF
NNNNNSKNGGSKGSNQQQNQGGGNHGLGINPGYLGSGLNAGGMFMQQNPGIGLVGNPMLA
AALNQPGLAVAAMAGIGGNFGLNNLNPGMIGNYGPLAALLGLGGLQGAETGQSSVGANAA
GVAVGTGSAQPQSDIGSSGMTLPS
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgggaaagcgaaaagcggacgacgaaaactcttcctcagaagatacctcttcatcg
tcctcgtcagaagaagaagattcctcctcctccggctcgggctccgaatcgtcgtcttca
tgcgaagaagaagaaggagaaggggttcaaaataatcgcaacgattcgtcagaaaggcag
aaagttgtaataatctcggatgaagaggaagaggttcaaaataacgacgacgaatcatca
aaaaaggagaaattaagggaacttttggaacccttgtccaaggatcagattttagggtat
ttaaaagaagaggccctaaaggacccgtctattctctctcggatcgtcgagaaagccgag
tccgaccccacccaccgcaaaatcttcatccacggcctagcctgggatgccaccgaggac
cagctcctccaagtcttcgaacctttcggagaagttgaggagctcaagctaataactgat
aaggttacgggccgggcaaagggttacgcttttctcctcttcaaaactcgggctgccgcc
aaaagtgcgctgaataatcctcagaagaaaattggcaaccggactgtcagttgccagctc
gcggttctcggtcctgctgccggttctgccccggcaggacaggctgccgaggttagtaag
aggaagctctttgtggctaacgttggcccgaatgctaatgtggagaggcttcgggctttt
tttgggaagtttggggagattgaggatgggccgttggggttggatccttctacgaacaag
ccaagagggtatgcgattttcgtgtacaagtcagttgatgggttgaacaaagcattggag
cagcctgctaagttgtttgaggggtcgcaattgaattgcaagaagtttgttgaaggtttt
aacaataataataatagtaagaatggtggtagcaagggcagtaatcaacagcagaatcag
ggtggtggtaatcatggtttaggcataaatccaggctatttgggttctggtttgaatgct
ggagggatgttcatgcagcagaatcctggcattgggttggttgggaatccaatgctcgca
gctgctttgaatcaaccaggcttggctgttgctgccatggctgggataggtgggaatttt
gggttgaataatttaaatcctggtatgataggaaactatggaccgctagcggctttgcta
ggcctagggggtttacaaggtgctgaaacggggcagtcttctgtaggagcaaatgcagct
ggagtagcggtagggactggatcagctcagcctcagtctgatattggatcatcagggatg
actttaccttcatag

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