Coffea arabica (coffee): 113743312
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Entry
113743312 CDS
T11342
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03020
RNA polymerase
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113743312
09124 Replication and repair
03420 Nucleotide excision repair
113743312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113743312
03400 DNA repair and recombination proteins [BR:
carb03400
]
113743312
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113743312
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113743312
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113743312
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
113743312
NCBI-ProteinID:
XP_027127095
UniProt:
A0A6P6XHC2
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Position
5e:complement(47297641..47304478)
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AA seq
1201 aa
AA seq
DB search
MFGGNDEFIDQNVNSNDGKEEYDIDDSDEITQEDAWAVISAYFEDKGLVRQQLDSFDEFI
QNTMQEIVDESADIEIRPESQHNPGRQSDFVETVYRISFGQIYLSKPMMTESDGETATLF
PKAARLRNLTYSSPLYVDVTKRVIRKGHDCEEVTEAQEFTKVFIGKVPIMLRSSYCSLFQ
KPEKDLNELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSI
AESQNKSPSSMFVRMLSRTSARGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
HICYDFSDMQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQRE
MLPHVGTGEFCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRM
LFRKLTRDVRSYIQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVRTL
RQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDILALQQREY
TEEFGWHDLIAKGYIEYVDTEEEETTMISMTINDLMNSRLHPDEAYSETYTHCEIHPSLI
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLGYVLYYPQKPLVTTRA
MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLSFRSYRDEEKKMGT
LVKEEFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTSVSQEEAQGLAL
RYTRRDHSTSLRHSESGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTV
GMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
TVDNISKALHKCGYQMRGFERVYNGHTGRIMGDLIFLGPTYYQRLKHMVDDKIHSRGRGP
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEYCGLIA
LACFKKSSFECRSCKNKTDIVQVYLPYACKLLIQELMAMAISPRLLTKEVNLLKEQSKKG
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtggaaacgatgaatttattgatcaaaatgtgaatagtaatgatggaaaagaa
gaatatgatattgatgactcagatgagataactcaagaagatgcatgggcagtgatcagt
gcatattttgaagacaagggtttggttagacaacagctggattcattcgacgagttcata
caaaacaccatgcaagaaattgttgatgaatctgctgatatcgaaatccgacctgagagt
cagcataaccccggcagacaatctgattttgttgagactgtttataggataagctttggc
caaatatacctgagtaagccgatgatgacagaatcagatggtgagactgctaccttattt
cctaaggctgcaagactgaggaacttgacatactcttcaccactatatgtggatgttact
aaaagagtcataagaaaagggcatgactgtgaagaagttactgaggctcaggagtttacc
aaagtttttattgggaaggttccaatcatgctacggtcaagttattgtagcttgtttcag
aaaccggagaaagatttaaatgagcttggagagtgtccatttgatcaaggaggatacttc
ataattaatgggagtgaaaaggtcctgattgcacaagaaaagatgagcactaaccatgtt
tatgtatttaagaaaaggcagccaaataaatatgcttatgtagctgaagttcggtctata
gctgaatcacaaaacaagtcacctagtagcatgtttgtcaggatgctttctaggaccagt
gccagagggggttcgtcagggcagtatatacgtgctaccctcccatacataagaacagaa
attcccataataatcgtctttcgagcattaggttttgttgctgacaaagacatactagag
cacatttgttatgatttttctgacatgcaaatgatggaactacttcggccttccttagaa
gaggcatttgtgattcaaaatcaacaagttgcacttgactacattggcaaaagaggttcc
acggtgggagtcacgcgagataaaagaattaagtatgccaaagaaatcctccagagggaa
atgcttccacatgttggtactggggagttctgtgaaactaagaaagcttattattttgga
tacatcatccatcggcttttactttgtgtccttggccgaagacctgaagatgatagggat
cactatgctaacaagaggctggaccttgctggtcctttacttggaggcttatttcgaatg
ctcttcagaaagttaacaagggatgtcagatcctatattcaaaagtgtgttgataatgga
aaggatgtaaatcttcaatttgcaatcaaagcaaaaacaatcacaagtggactcaagtac
tctcttgctactgggaactgggggcaagcaaatgcagctggtacaagagcaggagtttct
caggtattaaatcgcttgacatacgcatcaactctatcccatttgaggagactgaactca
ccaattggaagagagggaaaattggcaaaacccagacagttgcataactctcactgggga
atgatgtgtcctgcagaaacacctgaaggacaagcctgtggactagtaaagaaccttgca
ctcatggtatacataacagtaggatcagcagcaaatcctattctagagtttttggaggaa
tggagcacagagaattttgaggaaatttctccagcggttattcctcaagccaccaaaatt
tttgtaaatggttgttgggttggcattcaccggaatcctgagctgttagtaaggacttta
agacaattgagaagacaggttgatgttaacactgaagttggagttatccgtgatatacac
ttaaaagaacttcgactgtatacagactatggtcgctgtagtcggccattgttcattgtg
gagaaacaaagattactcataaagaaaaaggatatcctagccttgcagcaaagagaatac
accgaggaatttggttggcatgatctcattgcaaaaggatacattgagtatgttgataca
gaagaagaggagaccacaatgatttcaatgacaataaatgatctcatgaattcaagactc
cacccagatgaggcttattctgaaacctacacgcactgcgaaattcatccttcactcata
ttgggagtttgtgcttcaatcattccctttccagatcataaccagtcccctcgtaatact
taccaatcagcaatgggaaagcaagcaatgggcatatatgttacaaattaccagttaaga
atggatacactggggtatgttctttattaccctcagaagcctctggttaccactcgagca
atggagcatttgcattttaggcaactgcctgctggaattaatgccattgttgccattgct
tgttattctggatacaatcaagaggactccgtaattatgaatcaatcctcaattgaccgt
ggattttttcgctctctttccttccgttcatatagggatgaggagaaaaagatgggaaca
ctcgtgaaggaggagtttggatgtccaaacagggaaaatacgatggggatgcgtcatgga
tcttatgataaactagatgatgatggctttgcacctcctggcacaagagtctcaggtgat
gatgtaattattggaaagactacatctgtttctcaagaagaagcccaagggctcgccttg
aggtatacccgacgtgatcatagtacaagtctgcgccatagtgagagcgggattgtggat
caggtgctcttaaccacgaatgctgatggattgaggtttgttaaaattcggatgagatca
gttcgaatacctcaaattggagacaaattcagtagtaggcatggacaaaagggtacagta
ggaatgacttatacacaagaagatatgccatggacaattgaaggcatttgcccagatatc
attgtgaacccgcatgccattccctctcgcatgaccattggtcagctgattgaatgcatt
atgggcaaagtggctgctcatatgggaaaggaaggggatgctactccatttactgatgtc
acggtggataatatcagcaaagctcttcataaatgtggatatcaaatgcggggctttgag
cgagtatacaacgggcacacaggtcgcataatgggtgatctgatattcctgggaccaact
tactaccagagattgaagcacatggtggatgataaaatccactctcgtggtcgaggtcct
gttcaaattcttacaaggcagccagctgagggtagatcgcgcgatggaggtttaagattt
ggggagatggaacgtgactgcatgatagctcatggcgctgcacacttccttaaagagagg
ttatttgaccagagcgatgcatacagggttcatgtctgtgagtactgtggtttgattgca
cttgcttgtttcaagaagagttcattcgagtgcagaagttgcaagaataaaactgatatt
gttcaggtgtatttaccttacgcctgtaagcttctaattcaagagctcatggccatggcg
atttccccaagattgttgacgaaggaagtgaatttgctaaaagaacagagcaagaaaggg
gcctaa
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integrated database retrieval system