KEGG   Coffea arabica (coffee): 113743312
Entry
113743312         CDS       T11342                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03020  RNA polymerase
carb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113743312
  09124 Replication and repair
   03420 Nucleotide excision repair
    113743312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carb03021]
    113743312
   03400 DNA repair and recombination proteins [BR:carb03400]
    113743312
Enzymes [BR:carb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     113743312
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     113743312
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113743312
SSDB
Other DBs
NCBI-GeneID: 113743312
NCBI-ProteinID: XP_027127095
UniProt: A0A6P6XHC2
LinkDB
Position
5e:complement(47297641..47304478)
AA seq 1201 aa
MFGGNDEFIDQNVNSNDGKEEYDIDDSDEITQEDAWAVISAYFEDKGLVRQQLDSFDEFI
QNTMQEIVDESADIEIRPESQHNPGRQSDFVETVYRISFGQIYLSKPMMTESDGETATLF
PKAARLRNLTYSSPLYVDVTKRVIRKGHDCEEVTEAQEFTKVFIGKVPIMLRSSYCSLFQ
KPEKDLNELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSI
AESQNKSPSSMFVRMLSRTSARGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE
HICYDFSDMQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIKYAKEILQRE
MLPHVGTGEFCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRM
LFRKLTRDVRSYIQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS
QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA
LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVRTL
RQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDILALQQREY
TEEFGWHDLIAKGYIEYVDTEEEETTMISMTINDLMNSRLHPDEAYSETYTHCEIHPSLI
LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLGYVLYYPQKPLVTTRA
MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLSFRSYRDEEKKMGT
LVKEEFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTSVSQEEAQGLAL
RYTRRDHSTSLRHSESGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTV
GMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
TVDNISKALHKCGYQMRGFERVYNGHTGRIMGDLIFLGPTYYQRLKHMVDDKIHSRGRGP
VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEYCGLIA
LACFKKSSFECRSCKNKTDIVQVYLPYACKLLIQELMAMAISPRLLTKEVNLLKEQSKKG
A
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgtttggtggaaacgatgaatttattgatcaaaatgtgaatagtaatgatggaaaagaa
gaatatgatattgatgactcagatgagataactcaagaagatgcatgggcagtgatcagt
gcatattttgaagacaagggtttggttagacaacagctggattcattcgacgagttcata
caaaacaccatgcaagaaattgttgatgaatctgctgatatcgaaatccgacctgagagt
cagcataaccccggcagacaatctgattttgttgagactgtttataggataagctttggc
caaatatacctgagtaagccgatgatgacagaatcagatggtgagactgctaccttattt
cctaaggctgcaagactgaggaacttgacatactcttcaccactatatgtggatgttact
aaaagagtcataagaaaagggcatgactgtgaagaagttactgaggctcaggagtttacc
aaagtttttattgggaaggttccaatcatgctacggtcaagttattgtagcttgtttcag
aaaccggagaaagatttaaatgagcttggagagtgtccatttgatcaaggaggatacttc
ataattaatgggagtgaaaaggtcctgattgcacaagaaaagatgagcactaaccatgtt
tatgtatttaagaaaaggcagccaaataaatatgcttatgtagctgaagttcggtctata
gctgaatcacaaaacaagtcacctagtagcatgtttgtcaggatgctttctaggaccagt
gccagagggggttcgtcagggcagtatatacgtgctaccctcccatacataagaacagaa
attcccataataatcgtctttcgagcattaggttttgttgctgacaaagacatactagag
cacatttgttatgatttttctgacatgcaaatgatggaactacttcggccttccttagaa
gaggcatttgtgattcaaaatcaacaagttgcacttgactacattggcaaaagaggttcc
acggtgggagtcacgcgagataaaagaattaagtatgccaaagaaatcctccagagggaa
atgcttccacatgttggtactggggagttctgtgaaactaagaaagcttattattttgga
tacatcatccatcggcttttactttgtgtccttggccgaagacctgaagatgatagggat
cactatgctaacaagaggctggaccttgctggtcctttacttggaggcttatttcgaatg
ctcttcagaaagttaacaagggatgtcagatcctatattcaaaagtgtgttgataatgga
aaggatgtaaatcttcaatttgcaatcaaagcaaaaacaatcacaagtggactcaagtac
tctcttgctactgggaactgggggcaagcaaatgcagctggtacaagagcaggagtttct
caggtattaaatcgcttgacatacgcatcaactctatcccatttgaggagactgaactca
ccaattggaagagagggaaaattggcaaaacccagacagttgcataactctcactgggga
atgatgtgtcctgcagaaacacctgaaggacaagcctgtggactagtaaagaaccttgca
ctcatggtatacataacagtaggatcagcagcaaatcctattctagagtttttggaggaa
tggagcacagagaattttgaggaaatttctccagcggttattcctcaagccaccaaaatt
tttgtaaatggttgttgggttggcattcaccggaatcctgagctgttagtaaggacttta
agacaattgagaagacaggttgatgttaacactgaagttggagttatccgtgatatacac
ttaaaagaacttcgactgtatacagactatggtcgctgtagtcggccattgttcattgtg
gagaaacaaagattactcataaagaaaaaggatatcctagccttgcagcaaagagaatac
accgaggaatttggttggcatgatctcattgcaaaaggatacattgagtatgttgataca
gaagaagaggagaccacaatgatttcaatgacaataaatgatctcatgaattcaagactc
cacccagatgaggcttattctgaaacctacacgcactgcgaaattcatccttcactcata
ttgggagtttgtgcttcaatcattccctttccagatcataaccagtcccctcgtaatact
taccaatcagcaatgggaaagcaagcaatgggcatatatgttacaaattaccagttaaga
atggatacactggggtatgttctttattaccctcagaagcctctggttaccactcgagca
atggagcatttgcattttaggcaactgcctgctggaattaatgccattgttgccattgct
tgttattctggatacaatcaagaggactccgtaattatgaatcaatcctcaattgaccgt
ggattttttcgctctctttccttccgttcatatagggatgaggagaaaaagatgggaaca
ctcgtgaaggaggagtttggatgtccaaacagggaaaatacgatggggatgcgtcatgga
tcttatgataaactagatgatgatggctttgcacctcctggcacaagagtctcaggtgat
gatgtaattattggaaagactacatctgtttctcaagaagaagcccaagggctcgccttg
aggtatacccgacgtgatcatagtacaagtctgcgccatagtgagagcgggattgtggat
caggtgctcttaaccacgaatgctgatggattgaggtttgttaaaattcggatgagatca
gttcgaatacctcaaattggagacaaattcagtagtaggcatggacaaaagggtacagta
ggaatgacttatacacaagaagatatgccatggacaattgaaggcatttgcccagatatc
attgtgaacccgcatgccattccctctcgcatgaccattggtcagctgattgaatgcatt
atgggcaaagtggctgctcatatgggaaaggaaggggatgctactccatttactgatgtc
acggtggataatatcagcaaagctcttcataaatgtggatatcaaatgcggggctttgag
cgagtatacaacgggcacacaggtcgcataatgggtgatctgatattcctgggaccaact
tactaccagagattgaagcacatggtggatgataaaatccactctcgtggtcgaggtcct
gttcaaattcttacaaggcagccagctgagggtagatcgcgcgatggaggtttaagattt
ggggagatggaacgtgactgcatgatagctcatggcgctgcacacttccttaaagagagg
ttatttgaccagagcgatgcatacagggttcatgtctgtgagtactgtggtttgattgca
cttgcttgtttcaagaagagttcattcgagtgcagaagttgcaagaataaaactgatatt
gttcaggtgtatttaccttacgcctgtaagcttctaattcaagagctcatggccatggcg
atttccccaagattgttgacgaaggaagtgaatttgctaaaagaacagagcaagaaaggg
gcctaa

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