Coffea arabica (coffee): 113743737
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Entry
113743737 CDS
T11342
Name
(RefSeq) syntaxin-52
KO
K08503
syntaxin of plants SYP5
Organism
carb Coffea arabica (coffee)
Pathway
carb04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
113743737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113743737
Membrane trafficking [BR:
carb04131
]
SNARE
SNAP-25[C] (Qc)
STX8
113743737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNARE
STX6_10_61_N
NPV_P10
Laminin_II
HAUS1
FUSC
CCDC93_CC
YjcZ
FapA
DUF2976
Motif
Other DBs
NCBI-GeneID:
113743737
NCBI-ProteinID:
XP_027127619
UniProt:
A0A6P6XK95
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All DBs
Position
5e:53279914..53283968
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AA seq
232 aa
AA seq
DB search
MASSGDPWVKEYNEAVKLADDITNMISERNSLPATGPEAQRHASAIRRKITILSTRLESL
QSLLSRLPGKQLTEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPVDAM
TRAKGLDNYGVVGLQRQVMKEQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDNLDEH
VDVTDSRLQRVQKRLAILNKKTKGGCSCMCLLLSVIGIVVLVAVIYLLVKYL
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctggagacccgtgggtgaaggagtacaatgaagcggtcaaactcgctgat
gacataactaacatgatttcagagaggaattcattgcctgcaacagggccagaggcccag
cgtcatgcatctgccatacgaaggaaaatcacgatattgtccactagacttgagagccta
caatctcttctttcaaggcttcctggaaagcagctgacagagaaagaaatgaatcgccgc
aaagatatgcttgcaaatttgagatcaaaagtaaaccagatggcctccacattgaacatg
tcaaactttgccaatagggacagcttgcttgggcctgagattaagcctgttgatgccatg
accagagcaaaaggtcttgacaactatggtgttgttggtcttcaacgacaagtcatgaaa
gagcaagatgagggcctggagaagttggaggagacagttataagcaccaaacacattgca
ttggcagtcaatgaagaacttgatctacacactagactaattgataacctggacgaacat
gtggatgtcactgattcccgcttacagcgagtgcagaagcggcttgcaattttgaacaaa
aaaaccaagggtggttgctcctgcatgtgcctgcttttatccgtcatcggcattgtggtt
ctggttgctgtaatatatctactggttaaatatttgtaa
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