Coffea arabica (coffee): 140003829
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Entry
140003829 CDS
T11342
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
140003829
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
140003829
microRNA pathway
RISC loading complex
140003829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
DND1_DSRM
dsrm
ResIII
PAZ
Cas3-like_C_2
Dodecin
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
140003829
NCBI-ProteinID:
XP_071910861
UniProt:
A0ABM4UUA7
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All DBs
Position
6e:complement(5838985..5859012)
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AA seq
1657 aa
AA seq
DB search
MDGCESTNVNGSAAAVRNFAAPFVANGTAETISVTTEHLSSLSLGDDGGDFSVQPQDKPE
KDPRKIARKYQLDLCQKALEENVIVYLGTGCGKTHIATLLIYEMGHLIKKPQKRICIFLA
PTVALVQQQAKVIEDSIDFKVGIYCGNSKRLRSHQEWERELEEHEILVMTPQILLHNLSH
CFIKIELIALLIFDECHYAQIESNHPYAEIMKIFYKSNVAELPRIFGMTASPILGKGASV
DGLETLLRAKVYSVEDVDELEQFVASPKLRIYYYDPTIIGSSCARISYHEQLEMIKHQCV
SDLTRKTGDHNTLRITKKMLQRLHGNIMFSLENLGLWGSLQASCILSKGDHYEQNEGTDA
EESSADNSLCDRYLTEAYSVLASACRKDDVAPDLSLVEFLKEPFFSRKLLRLIGILRTFR
LQPNMKCIVFVNRIVTARSLSYILKNLKFLSSWKCHFLIGVHSGLKSMSRKTTNAILEKF
RSGELNLLIATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPESEYAFLVNSGN
EKEINLIKHFVKDELKMHQDISSRKSQVTMTDFEEKTYQVDLTGATISSASSISLLHHYC
SKLPHDEYFNPRPQFFYLDEADGMVCLIILPSNAPIHEIVSASQVSFEAAKKDACLKACK
TLHEVGALTDYLLPEQDSGSEETDDNFSDTENCDDDDLRRELHEMLIPAALKETWTELKN
SVSLCTYHFKFCPNPIDRLYREFALFVKSPLPKEAEKMKLDLHLDRGRSVLTELVPYGVV
KFTKDELVQAEKFQRMFLKVILDRSEFTSEFVSLENKTGDPISSTSYLLLPILLNNNNKV
SVDWKLVEKCLSSSIFGAPKCAGHDESSQDKRQLHLAKGIKSAEEVVNSLVYVPCKDTFF
FVSDIVYYKNGYSSIKDSKNHLDLYMEKFSIQLCYPHQPLLKAKQVFCLDNLLRKKGYSE
VREKEEHFIELPPEICQLKIVGFSKDIGSSLSLLPSIMHRLESLLVAIELKNKLSASFPQ
GAEVTVQRVLEALTTEKCNELFSLERLEVLGDAFLKFAVGRRLFLLHNSLDEGQLTKKRS
NIVNNSNLLNLAMRKNLQVYIRDQSFEPNQFFALGRPCPVICSKQTENAIHSHASSVNDV
NTEVRCSKCHHWLYKKTIADVVEALIGAFLVDSGFGGATAFLKWIGIQIDFEESQLLNIF
NESKNFLPLANQINITALENLLGYKFRHKGLLIQAFVHPSYNNHLGGCYQRLEFLGDAML
DYLITSYLYSVYPKLKPGQLTDLRSASVNNTSFADIAIHCSFHEFIICDSSALSKSMEQY
VSFTQTTERGQIDEPTCPKSPHLTSLWITVFFQALGDLVESCMGAILLDTGFNLNCVWKI
MLSLLNPTMSSSKLWINPIRDLQELCQCHGMDLQFSASRKSGIYTVQSKVTSGDLIMNDS
ATNISKKAAKRMAAKQLYSRLKAVGYTAKSKSLDEVLKETEKMEAQLIGFDEKPSVVNGK
FYDFRVQEASETENGLKVYPLNEDPGNDYNSSHKHIRQIVAPYNASRWRPTGATKSLICN
PDSREAGGMSTGSPKSRLYEICATNYWGSPIFECLKENGPSHLKEYTFKVVVEIDDALNQ
VVECCGEPRPRKKDAEQSAAEGALWYLKREGYLWHQN
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggacggctgcgagtccactaatgtgaatggttccgccgctgcagtgagaaattttgcg
gccccttttgtagccaatgggactgccgagacaatttcagtgaccacggagcacttgtca
agtctgtctctcggtgatgatggaggagacttctccgttcagcctcaagacaaaccagag
aaagaccccagaaagattgccagaaagtatcagttggatctttgtcagaaagccttggag
gaaaatgttattgtatatcttggaacaggttgtgggaaaacccatattgctacattgcta
atctatgagatgggtcacttaataaaaaagccacagaaaagaatttgcatattccttgca
cctacagtggcgttggttcaacagcaagctaaggtcattgaagactccatagactttaaa
gttggaatctactgtggaaattctaagcgtttaaggagtcatcaggaatgggaaagagaa
ctggaagagcatgagatccttgttatgacccctcagattttgttacataatttgtcccac
tgcttcatcaaaattgagctgatagcacttctaatatttgatgaatgtcattatgcccaa
attgaaagcaatcatccttatgctgaaattatgaagatcttctataaatcaaatgtagca
gaacttccccgtatatttggcatgaccgcatctccaatactagggaaaggtgcttctgtt
gatggtcttgaaaccttactacgtgctaaagtttattctgttgaagatgttgatgaactt
gagcaatttgttgcttcacctaagcttaggatatattattatgatcctactataattggc
tcttcttgtgctcgtataagctaccatgagcaacttgagatgataaagcatcagtgtgtg
tctgatctaacccggaaaactggtgatcataatactcttaggattaccaaaaagatgcta
cagaggctgcatggtaatatcatgtttagtttggaaaaccttggtctttggggatcttta
caggcaagttgtatcctttcgaagggtgatcactatgagcaaaatgaagggacagatgca
gaagagagttctgccgataactccttatgtgacagatacttaactgaagcttactctgtt
cttgcttctgcctgtaggaaagatgatgtcgcacctgatttatccctggtggagttcctg
aaggagccctttttttcaagaaagctcttacgacttattggaattcttcgcaccttcagg
ttacagccaaacatgaaatgcatagtgtttgtcaacaggattgtgactgcccggtccttg
tcatatatacttaagaaccttaaattcttgtcttcttggaagtgtcatttccttatagga
gtccactctggactgaaaagtatgtctcgaaagactacaaatgctattcttgagaagttt
cgatctggtgagcttaatttattaattgcaactaaggtgggtgaggaaggacttgatata
cagacttgctgccttgtaataaggttcgatcttccagaaactgtggccagtttcatacaa
tctcgaggtcgtgcaagaatgccggagtccgaatatgcctttttggtcaacagtggcaat
gaaaaggagataaacttgataaaacattttgtaaaagatgaactcaagatgcatcaagac
atttcgtcaaggaaatctcaagtaacaatgactgattttgaagaaaaaacatatcaggtg
gatttgaccggtgccactatcagttcagcatctagtatatcgttgcttcatcactactgt
tcaaagcttccacatgatgaatatttcaacccaagaccacagttcttctatttggatgag
gcagatggaatggtttgccttataattctaccatcaaatgctccaatccacgagattgtg
agtgcttcacaagtttcattcgaagcagctaaaaaagatgcatgtttgaaagcatgcaag
actctgcacgaagtcggagctctaactgactatctcctgccagaacaagatagtggcagt
gaggaaacagacgataatttctctgatacagagaactgtgatgatgatgatttgcggaga
gaactgcatgagatgctgattcctgcagcccttaaagaaacctggactgagctgaaaaat
tctgtttccctttgcacttaccattttaagttttgtcctaatcccatagatagactttac
agggagtttgctctttttgtcaaatcacctctgccaaaagaggctgagaaaatgaaactt
gatcttcatttggatcgtggtagatctgtcttgactgagcttgttccatatggagtagta
aaattcactaaagatgagctggtgcaagcagagaaattccaaagaatgttcctcaaggtg
attctcgatcgatcagagtttacttctgaatttgtatcactggaaaataaaactggcgat
ccaatctcgtcaacatcttacctgttacttcctatacttcttaacaataacaacaaggtt
tctgtggattggaaacttgttgagaaatgtttatcctcatcaatctttggtgctccaaaa
tgtgctggacatgatgaaagttctcaggacaaaagacagttgcatcttgcaaaaggaatc
aagagtgcagaggaagttgtaaacagtttggtatatgtaccgtgcaaggacacattcttt
tttgtttctgacattgtttattacaagaatggatatagctcaatcaaggattccaagaat
catctagacctctacatggaaaagtttagcattcagctttgttatcctcatcaaccactt
ttgaaagcaaaacaagtattctgtttggacaacttactgcggaagaaagggtattcagaa
gtacgtgagaaagaggagcacttcattgagttacctcctgagatttgccagttgaagata
gttgggttttcaaaagatattgggagttcattgtcattgttaccttcaattatgcaccgt
ctggaaagcttgcttgtggcaattgagctgaagaacaaattatctgcttcatttccccaa
ggagcagaagttactgttcagcgtgttcttgaagctcttacaacagagaagtgcaatgag
ctcttttctcttgaaaggctggaggtgcttggtgatgcattcctcaagtttgcagttggt
agacgtctatttcttttgcacaactccctagatgaaggacagctgacaaaaaagcggtct
aacattgtcaacaattccaatttactcaacctggctatgagaaagaatttgcaggtatat
atacgtgatcaatcatttgaacccaaccaattcttcgctctgggtcgtccttgtcctgta
atttgcagcaagcaaacagaaaatgcaatacactctcatgcaagttcggtgaatgatgta
aatactgaggttcgatgcagcaaatgtcatcattggttgtacaagaaaaccattgctgat
gtggttgaggctcttattggtgcatttttagttgattctggctttggaggcgcaactgct
ttcctcaagtggattggcatacaaattgattttgaagagtcacaacttcttaacatcttc
aatgaaagcaaaaactttctccctttagccaatcagataaatataactgcccttgagaat
ctactagggtataagtttaggcataaaggtttgctcattcaggcatttgtccacccttcc
tacaacaaccacttgggaggttgctaccaaagacttgagtttcttggagatgccatgttg
gattatctgattacatcctatttatactcagtgtatcccaaattgaagcctggtcaactg
acagatttgagatctgcatctgtgaataatacttcatttgctgacattgctattcattgc
tccttccacgaatttatcatttgtgattctagtgcactctccaagtctatggagcaatat
gtcagcttcactcaaacaacagaaagaggacagattgacgagccaacttgtccaaagtct
ccacacttgacctcactctggatcaccgtgttctttcaggccctgggtgacttggttgag
tcttgcatgggtgccattcttcttgacacagggttcaacttaaattgtgtctggaagata
atgctttccttgttaaaccctaccatgagctcttccaagttgtggattaatcctattagg
gatcttcaggaactttgccagtgtcatggcatggatttgcagttttcagcgtcaaggaag
agtggaatatatactgttcaatcaaaagtgacttcgggagatttgattatgaatgattct
gcaactaacatcagcaaaaaggctgccaaaagaatggctgcaaaacaactatattcacgt
ttaaaggctgtaggttacactgccaagtcgaagtcattagacgaagtgctaaaagaaact
gaaaagatggaagcccaattgattggatttgatgagaagccttcggttgttaatggtaaa
ttttacgacttcagggtgcaagaagcttctgaaactgaaaatggcttgaaggtgtatccc
ctgaatgaagatcctggaaacgactataactcaagccacaagcacataaggcagattgtg
gctccatacaatgcttcacgatggcggcctacaggggccactaaaagtctaatatgcaat
cctgattcacgggaagcaggtggtatgagtactggatcacccaagtcacgcttgtatgaa
atttgtgccaccaactattggggatcgcctatattcgaatgcttgaaggagaatgggccg
agccacctgaaagaatacacgttcaaggtggtggtggaaattgatgacgccttgaatcaa
gtagtggaatgttgtggggagccccggccaagaaagaaggatgctgaacagagcgctgct
gaaggggcgctctggtacttgaagcgtgaaggttatctatggcaccagaactga
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integrated database retrieval system
