Coffea arabica (coffee): 140003957
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Entry
140003957 CDS
T11342
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
carb03440
Homologous recombination
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140003957
03420 Nucleotide excision repair
140003957
03430 Mismatch repair
140003957
03440 Homologous recombination
140003957
03460 Fanconi anemia pathway
140003957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
140003957
03032 DNA replication proteins [BR:
carb03032
]
140003957
03400 DNA repair and recombination proteins [BR:
carb03400
]
140003957
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140003957
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140003957
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140003957
MMR (mismatch excision repair)
140003957
DSBR (double strand breaks repair)
HR (homologous recombination)
140003957
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
140003957
NCBI-ProteinID:
XP_071911180
UniProt:
A0ABM4UV66
LinkDB
All DBs
Position
6e:complement(9664210..9668799)
Genome browser
AA seq
641 aa
AA seq
DB search
MPVHLTQNAVSAITAGDVNSKPLVQVLDIKLIGSTQERYRLLISDSVLTQHAMLATQLND
SVKSGRIRKGTVVQLIDYICSTVQNRKIIVILNMETIIPDCDIIGNPKMIGDLDTGVQRS
VPDRNNGSATLTNNNNLGTQNSGRSNFSNNNNLISRNSGSNNVQSFRPTVQPAYQPPPIY
KNHGAIVKNEAPARIVPIAALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDS
DGGEIRVTCFNAVVDRFYDIIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLDTSSTVDL
CPDEDASIPQQQFSFRPISDIENVENNSILDVIGIVISVNPSVPIVRKNGMETQRRILNL
KDRSGRSVELTLWGDFCNREGQKLREMVEAGHFPVLAVKAGKVNNFTGKSVGTISSTQLF
IDPDFSEAHILRDWFDGGGKDVASQSISREIMPGGLKNEIRKTVCQIRDEGLGRSDKPDW
ITVKATISFIKTDTFCYTACPLMIGERQCNKKVARSGNSRWLCDRCNQEFEECDYRYLLQ
TQIQDHTGLTWVTAFQESGEEILGCSAKDLYLLKYEEENELRFAEIIKSCLFTQFMFRLK
IKEEIYGDEQRVKITVVKAEKVNSSTECSYLLEQISKFSFR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcacctgacgcagaatgcggtctcggcgataaccgccggcgacgtgaactcg
aagccgctcgtacaggttctggatattaagctcattggctccactcaggaacggtaccgc
cttttgatctccgattcggttctgactcagcacgcgatgctcgccactcagctcaacgac
tcagtcaagtcaggccgcatccgcaagggtaccgtcgttcagttgattgactatatctgc
agcaccgtccagaatcgcaagataatagttatcctaaatatggaaactataattccggat
tgtgacataattgggaacccaaaaatgattggcgacttggatacaggggttcaaagatca
gtgcctgataggaataacgggtctgcgacattgactaacaataacaatttgggtactcaa
aactctgggcgttcaaacttctcaaacaacaataatttgatctctcgtaattcagggagc
aataatgtacagagtttcaggccaacagttcaacccgcataccaacctcctccaatttac
aaaaaccatggtgctatcgtaaaaaatgaagccccagcacgcattgttccaattgcagca
ttgaatccttatcagggtcgttgggctgttaaggcaagagtgactgcaaaaggagatctt
cgtcgctacaacaatgccaggggagatggaaaggtcttttcttttgatcttcttgattct
gatggaggggaaatacgagttacctgtttcaatgccgttgttgaccgattttacgatatt
attgaagttgggaaagtttacatgatatcaaaaggtagcttaaaaccagctcaaaagaac
ttcaaccatctgaagaatgaatgggaaatatttttggacacgagttcaactgtagatctt
tgcccagatgaagacgcttcaataccacaacagcagttctcattcaggcctattagtgat
attgaaaatgttgagaataattccatattggatgttattggtatagtaattagtgttaat
ccttctgttcctatcgtgagaaagaatggaatggaaacacagaggagaatcctgaattta
aaggatcggtctggaaggagtgttgagttaactctctggggagacttctgcaaccgggaa
ggccaaaagctacgggaaatggtagaagctgggcatttccctgttttagctgtcaaagct
ggaaaagttaataacttcactgggaaatcagtggggactatttcttccactcagctcttc
atagaccctgatttttcagaggctcacatcttaagggactggtttgatggaggaggaaaa
gatgttgcttcccagtccatatctagggaaattatgcctggaggattgaagaatgaaata
cgtaaaactgtgtgtcagatcagagatgaaggccttggaagatcagataaaccagattgg
atcactgtcaaggccacaatatctttcataaagaccgacactttttgctacacagcttgt
ccactaatgattggggaaagacagtgcaataagaaagtagcgaggtcaggaaactctaga
tggctatgtgacagatgcaatcaagaatttgaggaatgtgattacagatatcttcttcaa
acccaaattcaggatcatacggggctgacgtgggtgactgctttccaggaatctggtgag
gagatattgggttgttcagcaaaggatttgtacttgttaaagtatgaagaagaaaatgag
ttgagattcgctgagatcattaagagctgtctgtttacacaatttatgttcaggctcaaa
atcaaagaggaaatatatggtgatgaacagagagtgaaaattacagttgtcaaggctgag
aaggtgaatagctcgacagaatgcagctatctacttgaacaaatttctaaattttctttc
cgttga
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