Coffea arabica (coffee): 140004031
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Entry
140004031 CDS
T11342
Name
(RefSeq) RNA pseudouridine synthase 2, chloroplastic-like isoform X1
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
140004031
Enzymes [BR:
carb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
140004031
Ribosome biogenesis [BR:
carb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
140004031
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Ortholog
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Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-GeneID:
140004031
NCBI-ProteinID:
XP_071925893
UniProt:
A0ABM4W278
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Position
10c:complement(2357192..2361322)
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AA seq
447 aa
AA seq
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MGSLSLSTISWSSLPSTKALKNIIPKPLSVISLSRLVNVKACTTSAGGNPQPISDRRTIN
FSGVKLQETVDVKSEKLRLDSWVSSRIHGISRARVQSSIRSGLVSVNGRIINKVSHMVRG
GDKVNCTISELQQLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNTSGTLVNGILH
HCSLPMLSLASEEVHSEAEDASDDEFIAFPRALKDNGGASSGKSEASIRPGIVHRLDKGT
SGLLVVAKDEHSHSHLAEQFKNRTIKRVYVSLTCGVPSPISGRVDVPVGRDSNNRIRMAV
FDGSTHSQKTRNAASRYRVIEVLAGGGSALVEWKLETGRTHQIRVHAKYMGVPLLGDELY
GGTKGMALSLLQPRTPSSFRENLQQLICKLERPCLHALSLGFTHPYTLENMHFSQMPPAD
FAEILTQLRDIRAEKVRHAIKYDRCLE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggggtccttgtcactcagtaccatctcttggagctcacttccctccaccaaagccttg
aaaaatattatccctaaacccctgtcggtaatttcgctttcaagactcgtcaatgtcaag
gcttgtaccacttctgccgggggaaacccacaacccatttctgaccggcgaactatcaat
ttctccggtgtcaaactccaagaaaccgttgatgtcaagtcggaaaagctgaggctggat
tcttgggtttcttcacgcattcatggcatcagcagagccagagttcagtccagcattcgc
tccggtctcgtctccgttaacggccgcatcattaataaggtttctcatatggtgagaggc
ggggataaggttaattgcacaatatcggagctgcagcagctaagggctgagccagaagat
ataccactggatatagtttatgaagatgatcacttacttgtggtcaacaagcctgctcat
atggtggttcatccggcacctgggaatacttctggaacgcttgtgaatggcattcttcat
cattgtagtcttcctatgctttcacttgcaagtgaggaagtacattctgaggcagaggat
gcttctgatgatgagtttattgcctttcctagagcactaaaagataatggaggtgcctct
tccggtaaatctgaggcatctattcgcccaggaattgtgcatagattagacaaaggaact
agtgggttacttgttgttgcaaaggatgaacattctcattcacatctggcagaacaattt
aagaaccgtacaataaaaagagtctatgtgagtcttacttgtggagttccatcaccaata
tcaggacgtgttgacgttcctgttggccgtgattcaaataatcgaattcgtatggctgtt
ttcgatggatctactcatagtcaaaagactcgcaatgctgctagtaggtatagagtaatt
gaagtgcttgctggtggtggttctgctttggttgaatggaaactagaaaccgggcgcact
catcagataagggtgcatgcaaagtatatgggagttcctctgttgggagatgagctttat
ggtggaaccaagggaatggccctctcattgcttcagcctaggaccccatccagctttcgt
gagaatcttcagcagttgatttgtaaactagaaagaccttgtcttcatgctttatctctg
ggatttacacacccatacactctagagaacatgcatttttctcagatgccacctgcagat
tttgctgaaatattaacccagcttcgtgacattagggcagagaaggtaagacatgcaata
aagtatgataggtgtcttgaatag
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