Coffea arabica (coffee): 140004095
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Entry
140004095 CDS
T11342
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
carb Coffea arabica (coffee)
Pathway
carb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
140004095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
140004095
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
140004095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
140004095
NCBI-ProteinID:
XP_071925128
UniProt:
A0ABM4W009
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Position
10c:2506941..2516852
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AA seq
791 aa
AA seq
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MMIADGIEDEEKWLAEGIAGIQHNAFYLHRAVESNNLREALKYSAQLLSELRTSRLSPHK
YYELYMRAFDELRRLEMFFKDEDRHGCSVVDLYELVQHAGNVLPRLYLLCTVGSVYIKSK
EAPAKDVLKDLVEMCRSVQHPIRGLFLRSYLAQISRDKLPDIGSEYEGDGDTVMDAVDFV
LQNFTEMNKLWVRMQHQGPIRVKEKLDKERSKLRDLVGKNLHVLSQVEGVDLEIYKDTVL
PRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGAFPQLQPAVDIKTVLSQLM
DRLSNYAASSAEVLPEFLQVEAFAKLSNAIGKVIEAQVEMPVVGAISLYVSLLTFALRVH
SDRLDYVDQVLGACVKKLSGSPKLEDNKATKQVVALLTAPLEKYNDIDTALTLSNYPRVM
DHLDAGTNKIMAMVLIQSIMKYNTCVSTAEKVDVLFELIKGLIKDIDGTLADELDEEDFK
EEQNSVARLVHMLYNDDPEEMLQIICTVRKHIMAGGPKRLPFTVPPLVFSALKLVRRLQG
LDGEVAGEEVPATPRKIFQLLNQIIEALSNVPSPELALRLYLQCAEAANDCDLEPVAYEF
FTQAFVLYEEEVADSKAQVTSIHLIIGTLQRMNAFGVENRDTLTHKATGYSAKLLKKPDQ
CRAVYACSHLFWVDDQDGIKDGERVLLCLKRSLRIANAAQQMANVTRGTGGPVTLFVEIL
NKYLYFFEKGNPQITSAAIQGLIELIKTEMQSDTATPDPASDAFFACTLRYIEFQKQKGG
AMGEKYDSIRI
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgctgacggaatcgaagacgaagagaaatggctagctgaaggcatcgccggg
attcaacacaacgccttttacctgcatcgtgctgtggagtccaataatctgagagaagca
cttaagtactccgcgcaacttttgtctgagcttcgaacttccagactttcacctcacaaa
tactacgagctttatatgcgagcttttgatgaattgcggaggcttgaaatgttcttcaag
gatgaggatagacatggttgttccgtcgttgacctttatgaacttgtccaacatgctggc
aatgttttacctcggctgtatcttttgtgtacagtaggatctgtttacatcaaatcaaag
gaggctccggcaaaggatgttcttaaggaccttgttgaaatgtgccgcagtgttcagcat
ccaatacgtgggctctttttgaggagttatttggctcaaattagtcgagataagttacca
gatattggctctgagtatgaaggagatggtgataccgtcatggatgctgtggattttgtg
cttcaaaactttactgagatgaataaactttgggttcgaatgcagcatcagggacctatc
agggtaaaagagaaactggacaaggaaaggagcaagcttcgtgatcttgttgggaagaat
ttgcatgtcctcagtcaagtagagggtgttgacctcgaaatatacaaagatactgttctc
ccaagggtcttggaacaggttgtcaattgtaaagatgagcttgcgcagtattatttgatg
gactgcataattcaggtctttccagatgagtatcacctacagactcttgagacattattg
ggtgcatttccccaacttcaacctgcagttgacattaagacagtgttatcacaactgatg
gacagattgtcaaactatgctgcttctagtgcagaagttttacctgaattcctacaagta
gaagcatttgccaagttaagcaatgccattggcaaggtgattgaagcacaggtggaaatg
ccagttgttggggccatttccttgtatgtctcccttctgacatttgctctcagagttcat
tcggatcgtcttgactatgtagatcaagttctgggagcatgtgtcaagaaactttctggg
agcccaaagcttgaagataataaggcgacaaagcaagtagttgctcttttaactgcaccg
ttagagaaatacaatgatattgacacagctctcactctttccaattatccgcgtgtcatg
gatcatcttgatgctgggactaataaaatcatggccatggttcttatccaaagtattatg
aagtacaacacgtgtgtctcgactgctgagaaggttgatgttttgtttgagttgataaaa
gggcttatcaaggatatagatggtactttagctgatgagctcgacgaggaggatttcaag
gaggagcagaattctgtggctcgacttgtacatatgctatataatgatgacccggaggag
atgttacagataatatgtaccgtgagaaagcatatcatggctggaggtccaaagcgcttg
ccttttacagttccacctcttgttttttctgccctcaagttggttaggcgattgcaagga
ctagatggagaagttgctggagaagaggtcccagcaactccaaggaaaatatttcagctc
ctgaatcagataattgaggcactctcaaatgttccatctcctgaactggcattgagattg
tacttacagtgtgctgaggctgccaatgactgtgatcttgagccagttgcttatgaattt
ttcacacaagcatttgtattatatgaggaagaagttgcggattctaaagcccaggtgact
tctatacacctaattattgggactcttcagaggatgaatgcatttggtgtggagaatagg
gatactctaacacacaaggccactgggtattcagcaaagcttttgaagaaacctgatcag
tgtcgggcagtttatgcctgttcacacctcttttgggttgatgatcaagatggaatcaag
gacggagaaagggttttactttgcctcaagcgatctctcaggattgcaaatgctgcacaa
caaatggccaacgttacaaggggcactggtggaccagttacactctttgttgaaatactg
aataagtatctttattttttcgaaaaggggaacccccagataacaagtgcagcaattcag
ggtcttatagaattaataaaaactgagatgcagagtgatacagcgacaccagatccagct
tcggatgctttctttgcctgcacgttacggtatattgaatttcagaaacaaaaaggtggt
gcaatgggtgagaaatatgattccatcagaatttga
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