KEGG   Coffea arabica (coffee): 140004105
Entry
140004105         CDS       T11342                                 
Name
(RefSeq) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
  KO
K05544  tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
Organism
carb  Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:carb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:carb03016]
    140004105
Enzymes [BR:carb01000]
 1. Oxidoreductases
  1.3  Acting on the CH-CH group of donors
   1.3.1  With NAD+ or NADP+ as acceptor
    1.3.1.89  tRNA-dihydrouridine47 synthase [NAD(P)+]
     140004105
Transfer RNA biogenesis [BR:carb03016]
 Eukaryotic type
  tRNA modification factors
   Dihydorouridine synthases
    140004105
SSDB
Motif
Pfam: Dus zf-CCCH_DUS3L zf-CCCH_4 zf-CCCH zf_CCCH_4 zf-CCCH_PARP12 zf-CCCH_9
Other DBs
NCBI-GeneID: 140004105
NCBI-ProteinID: XP_071930664
UniProt: A0ABM4WFV1
LinkDB
Position
2c:complement(15702815..15707077)
AA seq 725 aa
MDGSAAEASVLEQPSFRENPQNSKPDDDASAPAAAPAPAPLTPEELVAKAIAPVKREFLR
PPPIRTSNSTTSQHHDAATEPNSAPLIKEKKSKRQLKRERRQELKSALHLCPEVAKSGDV
GSCCYGEKCRFSHDVEAFNAQKPADLKGSCPFLKIDQGLCPYGLACRFSGTHTANGVVAA
GTLRNEVNSLNKDVQKLLWKNKMRFPKADATLKLLGLSGKIKKLVDTEDNQVATNGSAEE
NAKKDSAEIGSVSDVNCCSELLEEDKPEDADATEDIRPVKKAKSSSDESYGSTEVNAGLS
TFGIDLFHFHHISGVLAVENFIGIGYGVHGKEDISSKPNGSKSVDIADTVTVESDKILKL
HPREKKLIDFREKLYLAPLTTVGNLPFRRVCKLLGADVTCGEMAMCTNLLQGQASEWALL
RRHSSEDLFGVQICAAYPDTVSRTVELIEQECSVDFIDLNMGCPIDIVVNKGAGSALLTK
PMRMKSVIQAASGTVDTPITIKVRTGYFEGRNRIDSVIEDIGNWGASAVTIHGRSRQQRY
SKLADWEYIYQCAQKAPDSLQVLGNGDVFSYLDWNKHKFDCPQLSACMVARGALIKPWIF
TEIKEQRHWDISSAERLDIFKDYVHFGLQHWGSDSKGVETTRHFLLEWLSYSCRYIPVGL
LDVIPQKINWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPAGFTFSPKHKSNAYD
SAENG
NT seq 2178 nt   +upstreamnt  +downstreamnt
atggacgggtctgcagctgaggccagtgttctggagcaaccctcattccgggagaatccc
caaaactcaaaacctgatgatgatgcttcagctccagccgcggctccggctccggctccg
ctcaccccagaagagttagtagctaaagccatagctccagttaagagagagttccttcgc
ccaccaccaatcagaacatccaactccaccacgtcccaacatcacgacgccgcaacggag
cccaactccgctcctcttatcaaagagaaaaagtccaaacgccagctcaaacgtgaacgc
cgccaagaattaaaatctgcattgcacttgtgtccggaggttgccaagagcggggatgtg
ggttcttgttgttacggtgaaaagtgccggtttagccatgatgtggaggcgttcaatgct
cagaagccggccgatttgaagggcagttgcccctttttgaagattgatcaaggactttgt
ccttatgggctggcttgtagattctccggcactcatacagctaatggtgttgttgctgct
gggactctgaggaatgaagttaattcgttgaataaggatgtccaaaagcttctctggaag
aataagatgaggttccccaaagctgacgctaccctcaagcttcttggcctttcaggtaaa
ataaaaaaattggtggacaccgaggacaatcaagttgctacaaatggctctgctgaggaa
aatgctaaaaaagattctgctgaaattggttctgttagtgatgtgaattgctgttctgaa
ttgctggaagaggataagccagaggatgctgatgcaactgaagatatacgacctgtcaag
aaggcaaaatcttcaagtgatgaatcttatggctccactgaagtaaatgctggtttgtct
acttttggtattgatttatttcattttcaccatatttctggggtactagcagttgaaaat
tttattggaataggttatggtgtgcatgggaaggaggatattagctccaaaccaaatgga
tcaaaatcggttgatattgctgatactgttactgtagagtctgataaaatcctaaaatta
cacccacgcgagaaaaagctcattgacttcagagaaaagctttatcttgcacctctgact
actgtggggaatctacctttccgaagggtttgcaaattgcttggagctgatgtgacatgt
ggcgagatggcaatgtgcactaatcttttgcaggggcaagcttcagaatgggcactactg
aggcgtcattcgtctgaggacctctttggtgttcagatttgtgcagcatatcctgataca
gtttcaagaactgttgaactcatagagcaggaatgctcggtggattttattgatcttaat
atgggatgtcccattgatattgttgttaacaagggcgctggatccgctcttcttacaaaa
ccaatgcgaatgaagagtgtcatacaagcagcttctggaacagttgataccccaataacc
atcaaggtgcgaactggctattttgagggcagaaatcgcattgattctgtgattgaagat
attggaaattggggagcaagtgcagtgactatacatggtcgttcgcgtcagcaacgttac
agcaagcttgctgattgggaatacatataccagtgtgcacaaaaggccccagattcattg
caagtccttggaaatggggatgtgttctcctatttagactggaataagcacaagtttgat
tgtcctcagctttctgcttgtatggttgctcgaggagccctaattaagccctggattttt
actgaaataaaggaacagagacattgggatattagttctgctgaacgtcttgatattttc
aaggattatgtgcattttggccttcaacactggggatctgattccaaaggtgtggaaaca
actaggcatttcttgttggaatggctaagttactcttgtaggtatataccggttggtctc
ttagatgtgatcccccaaaaaataaactggcggcctccctcgtactatggtcgggatgac
cttgaaacactgatggcttctgattcagctgcagattggattagaatctctgagatgtta
cttggcaaggtcccagctggatttacgttctcaccaaagcacaagtccaatgcctatgac
agcgctgaaaatggctaa

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