Coffea arabica (coffee): 140004129
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Entry
140004129 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140004129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
140004129
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
140004129
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
140004129
NCBI-ProteinID:
XP_071930705
UniProt:
A0A6P6WAZ3
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Position
2c:complement(16097407..16107190)
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AA seq
906 aa
AA seq
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MGSTTVGWQRGERMPVSRKRFLPYGPSDINLKTQKRMKIGGMKSGSACWREELDVKKQKL
SAKVIDYSDPFTTSSVLEELGSGKYGSVTKDMEDLICRRRLLLGIYCAVDPTLANLDLEN
YSSEKPFETKGSTSVDVIDVEDDCDASTVAPLQSVPGVQHLPLAGPLVILDSDDEDLRNE
GSAYPYQEIVLPDPGRNLLLKDFENQRSRAGVVSSISQMEDKNDKGVYVGLEDDMDDNEH
SSANDDGLDDIWKEMTFAMESSKETAVEPSCDEPAAEDADECDHSFILKDDIGYVCRVCG
IIKRSIETIIEYQYAKARSTRTYRYEGRSAKDPDQTEYTPGGVKLCAHDFTAAEISAHPR
HRKQMKPHQIEGFNFLLSNLMTDNPGGCIMAHAPGSGKTFMIISFLQSFMAKYPFSRPLV
VLPRGILATWKKEFQRWQVEDIPLFDFYSVKADSRTQQLEVLRKWAEERSILFLGYKQFS
SIVCDTNCSKAAASCQEILLTCPSILILDEGHTPRNQDTDVLTSLEKVQTPRKIVLSGTL
YQNHVKEVFTILNLVRPKFLRLGTSKGIKRRILSRVSISSRRDILRKGSDNEFYEVVEHT
LLKDKDFKRKVTVIQDLREMTSKVLHYYKGDFLDELPGLVDFTLLLKLCPKQQKEVAELK
KLSRKFKISSEGSALYVHPQLKCLSKNSVVKDRVDEEKIDMILEKLEERDGVKTKFYLNL
LQLCESSGEKLLVFSQFLLPLKFLERLTVKAKGYSVGKEIFMITGDSDNDTREISMERFN
TSSDARVFFGSIRACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQERKVYVYRL
VASGSPEEEDHSTCFRKESIAKMWFEWNEFYGHHDFEMEAVDVRDCGDLFLEAPRLREDL
ISVYKR
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgggctctaccacggttggctggcaaagaggagagagaatgccggtgtccagaaaaagg
ttcctgccttacggacccagtgatattaatttgaaaacacagaagaggatgaaaattgga
ggcatgaaatctggttctgcatgttggcgtgaggaattggatgtgaagaaacaaaaactt
tctgcaaaagttattgactattctgatccgtttaccacgtctagtgtgctggaagaattg
ggttctggaaaatatggaagtgttaccaaggatatggaggaccttatttgtcggaggcga
ctgttattaggtatttactgtgcagttgatcctacacttgctaatctggatttggaaaac
tactcaagtgaaaagccgtttgagacaaagggatcaacttctgttgatgtcattgatgtg
gaagatgattgtgatgcaagcactgttgctccactgcagtctgttccaggggtacagcat
ctccctctagctgggcctcttgtcattcttgattcagatgatgaagacctcaggaatgag
ggctctgcatatccctaccaggagattgtgttgccagatccaggtagaaatttgctattg
aaggattttgagaatcaacgttcaagagcaggagttgtcagctcgatcagtcagatggaa
gataagaatgataaaggtgtctatgtggggttagaggatgacatggatgacaatgagcac
tccagcgctaatgatgatggcctggatgatatctggaaagagatgacatttgcaatggaa
tcttcaaaggaaactgctgtagaaccttcatgtgatgaacctgcggctgaggatgcagac
gagtgtgatcattcttttatactaaaagatgatattggttacgtatgtcgtgtttgtgga
atcattaagagaagtattgagaccataatagagtatcagtatgcaaaggctaggagtacc
agaacataccgatatgaaggtcgttcagccaaggaccctgaccaaactgaatatactcca
ggaggagttaagttatgtgctcatgatttcactgcggctgaaatatctgcccaccctagg
catcgcaagcaaatgaagccacatcaaattgagggcttcaattttcttttaagcaacttg
atgacagataatcccggtggttgtattatggcccatgctcccggatctgggaaaaccttt
atgattatcagttttctacagagttttatggctaagtatccattttcaaggcctttggtt
gtgctaccaagaggcatcttggccacatggaagaaggaatttcaaagatggcaagtagag
gacattcccctttttgacttttattcagtcaaagcagatagtagaactcagcagcttgaa
gttttaaggaaatgggccgaagaaaggagcattcttttcttaggatataagcaattttct
tcaattgtatgcgacacaaattgcagcaaggctgcagcttcctgccaagagatcctttta
acttgcccttcaattcttatactagatgagggtcacacgcctaggaatcaagatactgat
gttttgacctcccttgaaaaggttcagacaccgagaaaaatcgtactctctgggaccctg
tatcagaatcatgtcaaagaagtttttaccattttgaaccttgtgaggcctaaattcctg
cgcttaggcacttcaaaaggcatcaaaagacgtatcttgagcagagtttcaataagtagc
agaagagatatcttgaggaaaggttcagacaacgaattctatgaagttgtagagcataca
ttgctgaaagataaagatttcaagagaaaggtaacagtcatacaagatttgcgagagatg
acaagtaaggtacttcactattacaagggagatttcctggatgaacttccgggacttgtt
gattttactcttctccttaagctgtgccctaaacaacaaaaggaagttgcagagctgaag
aaattgtccaggaagttcaaaataagttctgaagggagtgctctctatgttcatcctcag
ctgaagtgtctttcaaagaattcagtagttaaagacagggttgatgaggagaagattgat
atgatcttagagaaattggaagagagagatggagtgaaaactaagttttatctgaatctc
cttcagctctgtgaatcaagtggcgagaagctgttggttttcagccagtttctcctgccc
ctcaagttcttggagaggttgacagtgaaggcaaaggggtatagtgttggaaaagaaata
tttatgatcactggtgattcagataatgacacacgggagatttctatggaaaggtttaac
acttcctcagatgctcgagtattctttggatccatcagagcatgtggtgaagggatttct
cttgtaggggcatcacgcattataatattggacgtgcatttgaacccttcagtcactcgc
caagctataggtcgtgcattccgacctggtcaggagaggaaagtctacgtgtatagattg
gttgcatcaggttcgccggaagaggaagaccactcaacctgctttaggaaagagtcaatt
gccaaaatgtggttcgaatggaacgagttttatggccaccatgactttgaaatggaggct
gtagatgtaagagattgtggtgatttgttcttggaagcacccagattgagggaggatttg
atctctgtatacaagagataa
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