Coffea arabica (coffee): 140004184
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Entry
140004184 CDS
T11342
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140004184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
140004184
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
140004184
Complex B
140004184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
FF_PRPF40A
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
140004184
NCBI-ProteinID:
XP_071935640
UniProt:
A0ABM4WV28
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All DBs
Position
2e:complement(18428310..18445492)
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AA seq
1005 aa
AA seq
DB search
MANNSQYTGMQPHRPPLIGSLGPPQSALPSMPLQYRAVPPPQQTQPYVALAPQPFLGHAN
VRMPPPPLPPAPQIQFHQPMHQLPLRPPPAGEGLPQAQARPLQDFQQSGPPTPVPGQPQQ
NTQISNNYMPGFGGPRMPLSSSNTQINVDPASQHQPMSQTTLLNFPAEGQAWLSNGNQGT
KPITPVQQTQEPCASAANPEITSKPDLGEKVSLLWIEHTARNGKKYYYNRLTRLSTWEKP
LALMTPIERADASTDWREYTSPDGRKYYYNRVAKQSKWRIPDEVKLARERVNLDSLNKTQ
ERKDASSQDSAAVSTSEVNASSSSIEASIFPAQPAVSSPNPVAPIVTEQSLVTPESSIPA
AEVSPVAMDDVDMQTSLESHTPFVAVLDKDAVSVALETTVRTPVSSCAVLSAPDTSVAGV
SPGNSEEARKDIKDSARSEEKTVEQGPLVYENKLEAKNAFKALLETENVGSDWTWDQAMR
VIINDRRYGALKSLGERKQAFNEFASQKKKQEAEERRARQKKAREDFKKMLEESKELTPS
IRWSKAISTFEDDERFKAVERAKDREDLFENYKEELEKKERAKAMEEQKHNRVEYLEFLK
SCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYIRDLEKEEEEQLKLRREEQRK
AERKNRDEFRKLMEEHVAAGILTAKTLWRDYCIQVKDSPAYLAVSSNSSGSTAKELFDDV
SEELVKKYLDDKAQIRDAVNIREISLTSSSTLDDFKAAIAKDVGSPVSDVNLKLVFDELL
ERAREKEEKEAKRRKRLADDLYQFLHGSKEISISSRWEDWKQLIEHRFIGEESFLQETFE
KFIMEQKEKAKEKERKHREDKARKDKDRRYREKKKEKHRRDKEKVVESRKGKERPKSDGT
DSDRTESHSFEERERSGRDRDSKHRKRHSSDNTSLDENEKDRPRNSHRHSDERKKLKRVE
LHSRTPEIASDSQYKKQRRDHRDSYRSGDHDEYRGGEIDEDGEVR
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataattctcaatacactggaatgcagccccatcggcctccactaattggttct
cttggtcctccacaaagtgctcttccatccatgcccctgcaataccgggctgtgccccca
ccacagcagacacagccatatgttgccttggctcctcaaccatttcttggacatgcaaac
gtccgaatgcccccaccacctcttcctccggctccacaaattcagtttcaccaacctatg
catcagcttcctcttagacctcctccagcaggagaaggtctgcctcaagcacaggcaagg
cccctgcaagattttcagcagagcggacctcctacacctgttcctggacagcctcagcaa
aatacacagatctcaaataactatatgccaggctttggtggacccagaatgcctctttca
tcatcaaatactcaaattaatgtggatcctgcttcccagcaccagccaatgtcccagaca
acacttctgaattttcctgctgagggacaagcttggttatcaaatggaaatcagggcaca
aaacctattacacctgtgcagcagacacaagaaccatgtgcaagtgctgcaaacccagaa
ataacttccaaacctgaccttggtgaaaaggtttctttgctttggatagagcacacagct
cgtaacgggaaaaagtactattacaataggttgacaaggctttctacttgggagaagcct
ctagcattaatgacaccgattgagagggctgatgcttcaactgactggagagaatatact
agtcctgatggcaggaagtattactacaatagagttgctaaacaatccaagtggcgtatc
ccggatgaagtcaagttggctcgtgaacgtgtaaatttggactctttgaataaaacacaa
gaaagaaaggatgcaagctctcaggactcagctgctgtctccacttctgaagtcaatgca
tcatcttccagtatagaagcatctattttccctgctcaacctgctgtgtcaagcccaaat
ccagtggcaccaattgttaccgaacaatctttagtgactcctgaatcttcaatcccagca
gctgaggtttctcctgtggcaatggacgatgttgatatgcagacttctttagaatctcat
acaccatttgttgctgtcttagacaaggatgcagtctcagttgccttggaaactactgtt
agaacaccagtaagtagttgtgctgttttgtctgctccggatacttcagttgctggagta
tctccaggaaatagtgaggaagccagaaaagacatcaaagatagtgcaagatccgaagag
aaaacagttgagcaggggcccttggtctatgagaacaagctggaggcaaagaatgcattc
aaagcccttttggaaactgaaaatgttgggtcagactggacttgggatcaggcaatgaga
gtaataattaatgatcgaagatatggtgctttaaaatcccttggagagaggaagcaagct
tttaacgagtttgcgagccaaaagaaaaagcaagaagctgaagagagacgtgctagacag
aaaaaagcacgggaagatttcaagaagatgctagaagaatccaaagagctcacaccatcc
ataagatggagtaaagcaatttccacatttgaagatgatgagcgatttaaagcagttgaa
cgagctaaagatcgtgaggatctttttgaaaattataaggaggaacttgagaagaaggaa
cgggcaaaagctatggaagagcagaaacataatagagtggaatatttagaatttcttaaa
tcttgtgattttataaaggcaagcagccagtggcgaaaagttcaagatcgcttagaggct
gatgaaaggtgctcacgccttgaaaaaattgatcgcttggaaatatttcaggaatacatt
cgtgatctagagaaggaagaagaggagcaattgaaattgcggagggaagaacaaagaaaa
gcagagcgtaaaaatcgtgacgaattccgcaagctgatggaggagcatgttgcagcgggc
atactcactgcaaaaactctctggcgtgattactgtattcaggttaaagattcgcctgct
tatctggctgtctcatcaaactcctcagggtcaactgcaaaagaactttttgacgatgtc
tcggaggagctagtaaagaagtatttggatgataaggcccagataagagatgcagtcaac
atcagagagatcagtttgacatcatcttcaactcttgacgacttcaaggctgcaattgca
aaagatgtcggttcaccagtttcagacgttaatttaaaacttgtatttgatgagctactg
gaaagagctagggaaaaggaggaaaaagaagctaagaggcgtaaacgtcttgctgatgac
ctttatcaatttctgcatggctcaaaggaaatttcaatttcttcaagatgggaggactgg
aaacaacttattgaacacaggttcattggagaagagagttttcttcaggaaacttttgaa
aagttcataatggaacaaaaggaaaaggcaaaagagaaggaacgaaagcatagggaggat
aaggccagaaaagataaagacagaaggtatagggagaagaagaaagagaaacaccgaaga
gacaaggagaaagtagttgaaagcaggaaagggaaagagagacccaagagtgatggaacg
gacagtgatagaacagagtcccacagttttgaagagagagaaaggtcaggcagagacagg
gacagtaaacacaggaagcggcactcaagtgacaatacaagtttggatgaaaacgagaaa
gatcggcctaggaactctcacagacacagtgatgaacgcaaaaaattgaagcgggtggaa
ctgcactcgaggactcccgaaattgcttcagatagccaatacaagaaacagaggagagat
catagggattcttacaggagtggtgatcatgatgagtacaggggtggagaaattgatgag
gatggggaggttcggtag
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