Coffea arabica (coffee): 140004246
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Entry
140004246 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
140004246
03036 Chromosome and associated proteins [BR:
carb03036
]
140004246
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140004246
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
140004246
SLIK complex
140004246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
Chromo_MIT1
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
140004246
NCBI-ProteinID:
XP_071926260
UniProt:
A0ABM4W3C7
LinkDB
All DBs
Position
1c:complement(43889910..43911617)
Genome browser
AA seq
1710 aa
AA seq
DB search
MAFYRNYTNETIEQRRVLDEKDQEQGMDRVIGNNDEVEATSSDNEVAVEDNSRLAGTQPP
ARRTVVAGKWGSSFWKDCQPMESRGVLESGEESKSGSEYKNEEGSEDESSDGEEDKANEL
EDGDNGKEVGKGQSVPPDEMLSDEYYEQDGDDQSDSFHHRALNRSSGFSSKPPPRPVTAN
KYASTKSKSSKADYDDDAADYEEDDEDEGDEDDPDDADFDPDFGATRGRRGGKEKDEDWG
AEESDESDNNENEDDLNISDEEDVYYSKPKARQKSKGGRSVKSTRQVKPVMSYSRRKRGR
ISIDEESLSEKDSENDSEEDFRSMTRRGTQIRRKNDGRSASVSSSNRINELRSSSRSVRK
VSYAESEESEEIDEGKKKKGQKEEFEDEDGDIIEKVLWHQPKGMAEEALRNNKSTEPVLL
SHLFDSEPDWNQMEFLIKWKGQSHLHCQWKSFSDLQNLSGFKKVVNYTKKVTEDVRYRKK
VSREEIEVNDVSKEMDLDIIKQNSQVERIIAERITKDISGDVVPEYLVKWQGLSYAEATW
EKDVDISFAQDAIDEYKTREAAIMIQGATVDLQRRKSKGSLRKLDEQPEWLKGGKLRDYQ
LEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIQGPFLVVVPLSTLSNW
AKEFRKWLPDMNVIVYVGTRASREVCQQYEFYNEKKTGRNINFDTLLTTYEVLLKDKAVL
SKIKWNYLMVDEAHRLKNSEASLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDAN
KFSSKDEFVQNYKNLSSFNEIELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSP
LQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTNFFS
SAKLERITLSSGKLVILDKLLNRLHETKHRVLIFSQMVRMLDILAEYLSFKGFQFQRLDG
STKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMS
RAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSA
FDKNELSAILRFGAEELFKEERNDEESKKRLLNMSIDEILERAEKVEETGAGEEEGHELL
SAFKVANFCSAEDDGSFWSRMIKPEAIAQAEEALAPRAARNIKSYAEANPPESTNKRKKR
GMESQERLSKRRKADTGYSPPVIEGATAQVRGWSYGNLSKRDATRFFRAVKKFGNDSQIS
LIVGEVGGAVEAAPTEAQVELYDALIDGCREAMKAESFDPKGPLLDFFGVPVKADELLSR
VEELQLLAKRISRYEDPISQFRALAYLKPATWSKGCGWNQKDDARLLLGIHYHGFGNWEK
IRLDEKLGLSKKIAPVELQHHETFLPRAPQLKERGSQLLEMELVAVGGKDSNIKMGRKVS
KKQKGALLNVSVARGKGRQGKSDSPGQNFQTNRAKAAKPHKVEPLVKEEGEMSDNEEVYE
QFKEVKWREWCEDVMVDEEKTLKRLQRLQSTSADLPKETVLSKIRNYLQLLGRRIDQVVL
EYEEGPYKKERMRTRLWNYVSSFSNLSGERLHQIYSKLKQEQPLTGVGPSHLNGSVPGDQ
ISALMDRGIDTEKFEAWKRRRRAEADASQGQPVQSPYQRLSSNGTRIPDPNASGILGAAP
SDNRHFSNGRPFRTHQAGFPPRHGFSSGIK
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggctttctataggaattatacgaatgaaaccatagaacagagaagggtattggatgag
aaagaccaggaacagggtatggatagagtaataggaaacaatgatgaagtggaagccact
tcgagtgataatgaggtggctgtggaagataatagtagactagcaggcacgcaaccgcct
gcaaggaggacagttgtggctggaaaatggggttcgagtttttggaaggattgtcagccc
atggagtcccgcggtgtgttggagtcgggagaagagtcaaagagtggttcggagtacaaa
aatgaagaaggatctgaagatgaatcatctgatggagaggaagataaggccaatgagttg
gaagatggtgataatgggaaagaagtgggtaagggtcagagtgtccctccggatgagatg
ttgtctgatgagtactatgagcaggatggtgatgatcagagtgactcattccatcacaga
gcattgaatcgctccagtggctttagttcgaagccaccacccagacctgttactgctaac
aagtatgcatctacaaagtcaaagtcttcaaaggctgattatgatgatgatgctgctgat
tatgaggaggacgatgaggatgaaggggatgaagatgatccggatgatgctgattttgat
ccagattttggtgccacaagaggacgaaggggaggcaaggaaaaagatgaagactggggt
gctgaagagtctgatgaatctgataacaatgagaatgaggatgatctgaatatttcagat
gaagaagatgtgtattatagcaagccgaaggccaggcaaaaaagcaagggtggacgaagt
gtgaagtctaccagacaagttaaaccagtcatgtcatatagtcggcgaaaaagaggtaga
atttcaattgatgaagaatcgttatcggaaaaggactcagagaatgatagcgaagaggat
ttccgaagcatgactaggagaggcacacagatccggaggaagaatgacggtcgatcagca
tcagttagcagttctaataggatcaacgaacttcgaagttcaagtcgctcagtgcgtaaa
gtatcatatgctgaaagtgaagaaagtgaagaaattgatgaaggcaagaaaaagaagggc
cagaaggaggaatttgaagatgaagatggtgacataattgaaaaggtattgtggcatcag
ccaaagggcatggcggaggaagctttaaggaacaacaaatcaacagaacctgttctgtta
agtcacttgtttgactcggaaccagattggaatcagatggagtttctgataaaatggaaa
ggccagtcacacttgcactgtcaatggaaatcattctctgatttgcaaaatctcagtggt
tttaaaaaggttgtgaactataccaaaaaagttactgaagatgtgaggtaccggaagaaa
gtatctcgtgaagagattgaggtgaatgatgtgagcaaggaaatggacttggacattatc
aagcaaaatagtcaggtggagagaatcattgctgaaagaatcaccaaagatatctccggt
gatgtggtgccagaatatttagttaaatggcaaggactgtcgtatgctgaagcaacttgg
gagaaggatgttgatatttcatttgctcaagatgctatcgatgaatacaagacccgtgag
gctgctataatgatccaaggagcaacagtggatttacagcgcagaaagagcaaaggaagt
ttgcgaaagcttgatgaacagcctgagtggttgaaaggaggaaaacttcgagattatcag
cttgaaggtctgaattttcttgttaacagctggagaaatgatacaaatgttatattagcg
gatgaaatgggtcttggtaaaactgtccagtcggtgtccatgcttggatttctgcagaat
gcgcagcaaattcagggaccatttcttgttgttgttccattatcaactttgtctaattgg
gcaaaagaatttagaaagtggcttcctgacatgaatgttattgtgtacgttggaacccgt
gcaagccgtgaggtttgtcagcaatatgaattttacaatgaaaagaaaactggcaggaat
ataaattttgatacacttttgactacctatgaggtgttactgaaggacaaagctgtcctc
tcaaaaattaagtggaattatctcatggttgatgaagcacataggctgaagaacagtgaa
gcttctctgtatacaacactcttggaatttagcacgaagaataagttgcttattactggt
actccattgcagaacagtgtggaagagctatgggctttgcttcattttcttgatgccaac
aagttctctagtaaggatgagtttgttcaaaactacaaaaatcttagttcatttaatgaa
attgagcttgcaaatcttcatatggaattgagacctcacattcttcgaagagttatcaag
gatgttgagaagtccttacctcctaagattgagcgcatactaagggttgagatgtctcca
ctccagaaacagtactataagtggatcttggagcgcaacttccatgatttgaataaaggt
gtccgtggaaatcaggtttcacttttaaatatagtggtggagttgaagaaatgctgcaat
catccatttttgtttgaaagtgcagaccatggctatggtggggacacaaacttttttagt
agcgctaagctggagagaataacgctaagcagtgggaagctagttatacttgataaattg
ctgaatagactgcatgagaccaaacatcgtgtcttaattttttctcagatggttaggatg
ctggatatactggcagaatatttgtcatttaaagggttccagtttcaaaggcttgatggt
agtacaaaggccgagttgcggcagcaggctatggaccattttaatgcccctggaagtgat
gatttctgttttcttctttctacacgtgctggtggcctgggtattaatcttgcaacagct
gatacagttatcatatttgattcagattggaatcctcagaatgacttgcaggcaatgagt
agagctcataggattgggcagcaagaagttgttaacatttaccggtttgtgacaagtaag
agtgtggaggaagatatcttggagagggctaagaagaagatggtccttgatcatttggtg
attcagaaactaaatgctgagggtcgattggagaagaaagaagcaaagaaagggagtgct
tttgacaaaaatgagctttcggcgatcttgaggtttggagcagaggaattatttaaagaa
gaaagaaatgacgaagaaagcaaaaagaggctcctaaatatgagtattgatgaaattctt
gaacgagcagaaaaggttgaagagacgggagctggtgaggaggaaggacacgaacttctc
agtgcttttaaggttgcaaatttctgcagtgctgaagatgatgggagtttttggagccgc
atgataaagccggaagcaattgctcaagctgaagaagctctagctcctcgtgctgctcgg
aatattaagagctatgcagaggcaaatcctcctgaaagtaccaacaaaaggaagaaaagg
ggaatggaatcccaggaaaggctatcaaagcgtcgcaaggcagatactggctactcacca
cctgtcattgagggtgctactgctcaagtaagaggctggtcctatgggaacctgtccaag
agagatgctacccgatttttccgtgcagttaaaaagtttgggaatgacagccagatcagc
ctaatagtgggagaggttggcggagcagttgaagctgctccgactgaggcacaggttgaa
ctttatgatgctctgatcgatggttgtagagaagcaatgaaagcagaaagctttgatcca
aaaggtcctttgttggatttctttggagtccctgtaaaagcagatgagctactaagtcgc
gttgaggagcttcaactgttagcaaagcgcattagccggtatgaagatccaatctctcaa
ttccgagcactggcttatctcaaaccagccacgtggtccaaaggttgtggctggaaccag
aaggatgatgcaaggctgcttttgggaatccattaccatggttttggcaattgggagaaa
ataagattagatgagaaacttggtctttcaaaaaagattgcaccggtggaacttcagcac
catgagacattcttgccacgtgctcctcagttgaaggaacgaggttcacaattgttggaa
atggaacttgtggctgttggcggcaaggattctaacatcaaaatgggtcgtaaggtttct
aagaaacaaaaaggagctctgttaaatgtttcagtagctcgtggaaaaggcagacagggg
aaatctgattctcctggtcagaactttcagacaaatagggccaaagctgcaaaacctcat
aaagttgagcctttagttaaagaggaaggtgagatgtctgataatgaagaagtatatgaa
cagttcaaggaagtgaaatggagggaatggtgtgaagatgtcatggttgatgaggaaaaa
actctcaaacgtctacagaggttgcagagtaccagtgccgatctccccaaagaaacggtg
ctttccaaaattcggaattacttacagcttcttggacggagaattgaccaagttgtcctg
gaatatgaggagggaccatataaaaaagagaggatgaggacacgcttatggaattatgtc
tccagcttctcaaatttgtcaggcgagaggcttcatcagatatattccaaacttaaacag
gagcaaccgctaactggagttgggccttcacatttgaatggttctgtacctggggatcag
atctccgctctaatggacagaggtattgatacagaaaaatttgaagcttggaaacgacgg
agaagagctgaagctgatgcatcccaaggtcagcctgttcagtctccttatcaaagactc
tcaagtaatggtacgcgtatacctgatccaaacgcttctgggattcttggtgcagctccg
tcagacaacagacacttcagtaatgggaggcctttcagaacgcatcaggctggcttcccc
ccaagacatggtttctcgtcgggtatcaagtag
DBGET
integrated database retrieval system
