Coffea arabica (coffee): 140004502
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Entry
140004502 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140004502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
140004502
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
140004502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
GTP1_OBG
Motif
Other DBs
NCBI-GeneID:
140004502
NCBI-ProteinID:
XP_071922237
UniProt:
A0ABM4VRS9
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All DBs
Position
9e:complement(14069307..14081535)
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AA seq
1135 aa
AA seq
DB search
MEEKRCTVAKRTRAQTKHQLKEMIDEYYEKKQEKKGKSERAHDSHEMNATEGKKREELES
GIVTRNFEEMVRISSSSNDEEQEGENVNRKMFNRKRKRTVKKIFYDDESSGSDVKILGEE
EVVEEVNWKEFNRMRRRRRRRRWRRRRDTVYKGKNYDGETGSSVKISQEQGKGEEVIANK
MNKRRKTVAKGKNDCDDGDGGSGSDVVFVTEEDVPPNLRCNYVKGRKQFSSRGKRGSSDG
NTRSERVNMESEPLENGAQDKGKGLLIDNLNTLDSKSSSSEEDADDSDRDYSEEESRSSS
TQSNHWGYCSEDKLEGGIGKDDGFIQLPSPKSRKQEPGLGTLRKCHLHVFDSESFDSSSE
DSDSSDQVPKKKKEGSRITKPSKRRERDVDYMNILLGSMLKDDEQTKENPFGFEDNGPTH
TLPLKFRFDDEDPAPPEKEDWQKEIDDLFTEMEMCLTLSASDFTESSKDGTHHVTATAKC
QAELCRSGKHQLILEEPIGIICKCCQIVHKEMKEIFPTLKMETPRRRDWVDLRRGDCFGM
HELHFDDSSFGNYYTSIDAEGSVLDLIPEHIRMSMYSHQLDGFVFLWKNIVGETCIEKLK
TELSDDGRGAIISHAPGTGKTCLTIVFILSLLKMYPMCRPVIIAPTSMLLTWENEFRKWG
HRIPFHNFNSKDLSGNELKTDAEFLRRVGSRMTKLYSWTKEKSVLGISYKLFEQIASGRK
GKGSGERLGEIFLQLPGFVVLDEGHTPRNQQSLVWKVLTGVKTKRKIILSGTPFQNNFDE
LYNTLCLVNPKLSGSVTFESCSRRWQRKSNVEKERWVSLTNAIDKNSDNAVEELKAMIDP
FVHVHKGSILEESLPGLKDTLVILRPTDEQKEILQLILDDWSRFDQVHLVSLISVHPSLA
AFSKRFSAHKDRLGVLGCSPYAGVKTKFAIELIRLCDASHEKVLVFSEFIHPLRFIMQQL
MDQLKWREGIEVLYMDGKCDEKNRQSSISSLNDASSKVKVLFASTKACSEGINLIGASRV
VLLDVVWNPSVERQAISRAYRLGQKKFVYVYHLITSGTLEVEKYAQQANKDRLSELVFSS
RVGQSNKSRISSVFEDKILEGMLDNKMLNDIFENVIHQPKGSNVFANFNYVEHKH
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagagatgcactgtagcgaagaggacaagggctcaaacaaagcatcaattg
aaggaaatgattgatgagtactatgagaagaagcaggagaagaaagggaaaagtgagaga
gcccatgactctcatgaaatgaacgctactgaggggaaaaagagggaagaattggagtca
ggtatagtcacaagaaatttcgaagaaatggttagaattagcagcagtagcaatgatgaa
gaacaagagggggaaaatgtgaaccggaagatgttcaatagaaagaggaagcgaactgtt
aaaaagatcttctacgatgatgagagtagtggaagtgatgttaagattttgggggaagag
gaagtggtggaagaagtgaactggaaggaatttaataggatgaggaggaggaggaggagg
aggaggtggaggaggaggagagacactgtttacaagggtaagaattatgatggggaaact
ggaagtagtgttaagatttcgcaggaacagggaaagggtgaagaagtgattgcaaataaa
atgaacaaaaggaggaaaactgttgctaagggtaagaatgactgtgatgatggtgatggg
ggaagtggaagcgatgtcgtgtttgtgactgaagaagatgtccctccaaacttgagatgt
aattatgtaaagggtaggaagcagttttcatctagaggaaagaggggtagtagtgatgga
aatacaagaagtgaaagggtgaacatggagagtgaacctttagagaatggagctcaggac
aagggaaagggtcttctgattgacaatcttaatacactcgactcaaaatcctctagctct
gaagaggatgctgatgattctgatagagactatagtgaggaagaatcaaggagctctagt
acgcaatcaaaccattggggttattgtagtgaggataaacttgaaggagggataggcaaa
gatgatggcttcattcaactcccaagtccaaagtccagaaaacaggaaccgggacttgga
acattaagaaagtgccaccttcatgtttttgacagtgaaagttttgattcttcaagtgag
gattctgattcatcagatcaggtgccaaagaagaaaaaggaaggtagtagaataactaag
ccctctaagagaagagaaagagacgtggattacatgaatattcttctggggtccatgctg
aaggatgatgagcagacaaaggaaaatccatttggttttgaagacaatggtcctactcat
acactgccgttaaaattcagatttgatgatgaggatcctgccccacccgagaaagaagac
tggcagaaagaaattgatgatctttttactgagatggaaatgtgcctcacattatctgct
tctgactttactgaatcatccaaggatggcactcatcatgtcactgcaacggccaaatgc
caagcagaattatgtcggtcagggaaacatcagctgattcttgaagaaccaattggaatc
atatgcaaatgttgtcaaattgtccataaggagatgaaggagatttttcctactctgaaa
atggaaactccacgaagacgggattgggttgaccttcgcagaggtgattgctttggtatg
catgagcttcattttgatgactcaagctttggaaactattatacctccattgacgctgaa
ggctctgtcctggatcttattccagaacatattaggatgtcaatgtatagtcatcagctg
gatggatttgtcttcttgtggaaaaacatagtaggagaaacctgtattgagaagctgaaa
actgaactgtctgatgatggaagaggagccataatatcacatgcccccggcaccgggaag
acctgcctgacaattgtttttattctgtcattgttgaaaatgtatccaatgtgccgaccc
gtgattatagcccctacaagcatgctgcttacctgggaaaatgagttccgaaaatgggga
catagaattccttttcataactttaatagcaaggatttgtcgggaaatgaactcaaaact
gatgcagaatttcttcggagagtaggaagtcgaatgacaaagctctactcgtggacaaag
gagaaaagtgttctaggaatcagctacaagttgtttgagcagattgctagtggacggaag
ggaaaaggaagtggtgaaaggcttggggaaatctttcttcaactgcctggatttgtggtt
cttgacgaagggcacacgcctcgcaatcaacagagtcttgtctggaaggttttgacagga
gttaagacaaaaagaaagataattctctctggaactccttttcagaataactttgacgag
ttgtataataccctttgcctggtaaacccaaagctttctggttcagtgacctttgagagt
tgcagcagaagatggcagcggaagagcaatgtggagaaagagagatgggtttccttgacc
aatgccattgacaagaactctgacaatgctgtagaggagctcaaagctatgatagatccc
tttgtacatgtacacaaaggttctatactagaagagagtctccctggtctgaaggacaca
cttgttattttgcggccaactgatgagcagaaggaaattcttcagcttatattggatgat
tggagcaggtttgaccaagtacatttggtgtcactcatttctgtccacccctcattagct
gctttcagtaaacgcttctctgcccacaaagacagactaggggtacttggatgcagtcct
tatgctggagtaaagacgaaatttgccattgagctcatccgtttatgtgatgcatcgcat
gagaaggttttagtattcagtgaatttattcaccctttgagattcataatgcagcagctg
atggatcagttaaagtggagggaaggcatagaagtgctgtatatggatggaaaatgtgac
gagaagaatcgtcagtcatcaattagttctctgaatgatgcctctagtaaggtgaaagtt
ctttttgcatccacaaaagcttgttctgaaggaataaatctaattggggcttcaagagtt
gttttgttagatgtcgtttggaatccttcagttgaaaggcaagcaataagcagagcatat
aggcttggccaaaagaagtttgtgtatgtttatcatttgataacttctgggaccttggag
gttgaaaagtatgctcaacaagcgaacaaagatcgcttgtctgagttggtattttcttct
cgagttgggcaaagtaacaagtctagaatctcatctgttttcgaagataaaatcttggaa
ggaatgcttgacaacaaaatgctgaatgatatctttgagaatgttattcaccagccaaag
ggatctaatgtatttgcaaacttcaattatgttgagcacaagcattag
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