Coffea arabica (coffee): 140004526
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Entry
140004526 CDS
T11342
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140004526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140004526
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
140004526
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
140004526
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
YutD-like
Motif
Other DBs
NCBI-GeneID:
140004526
NCBI-ProteinID:
XP_071901412
UniProt:
A0ABM4U2A7
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Position
4c
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AA seq
844 aa
AA seq
DB search
MVGSDGSNGSMSPSPPQRQTRESAPKQYGVTKPLSQSGPSEADKLRTKELEKFLDDSGLY
ESAVEAVKREEVLTRLKQIVKDWVKEITRLRGYTDQMVEDANALILTFGSYRLGVHGPGA
DIDTLCVGPSYVMREDFFYVLHDILAEMEEVGELQPVPDAHVPVMKFKFDGISIDLLYAS
IDLLVVPDDLDISDVSVLHNVDEATGRSLNGCRVADHILKLVPNVKNFRTALRCLKFWAK
RRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCEIED
NELGFSVWDPRKNHWDRGHHMPIITPAYPCMNSSYNVSASTLRVMMEQFQFGNKICEEIE
LNKAQWSALFEPYLFFESYKNYLQVDIIAADVDDLRAWKGWVESRLRQLTLMIERDTYGK
LQCHPYPHDYVDSSKQRAHCAFFMGLQRKPGEVIQEGQQFDIRGTVDEFRHQITMYNFWK
PGMEIYVYHVRRKQIPSYVFPEGYKRSRPSRLTNQQLGDKSSEENGEIYRSGSTERCLRR
KRELEGSENNQSSPEKRQSISPWERDSISPENGDIYRSGSTEGCLNRKRELEGSENNQVS
PEKRQSIRPQRRDSMSPDLLGVKNGIALNECSSTVLVRGMEGAEANGLCLSGSTSELLSD
NLTNGGTGIQRNERQQVEQQKEVSEELNKLNGDTLLVENGKAGYILDTSVLAHVNSELTS
KDVGSLSLAGNHDNNHGSRDGFKLQESSWVDSHKSDTKLLVNNHGENSAQLYGDELQELE
PNAAHHEVVLKSRDAVSSESVQKTVMRHVHQFLLLDSFMFICFLGHFCLYAAVCRLFYGH
FVAG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggtgggttcagatggttcgaatgggtccatgtcaccttcgccgccgcagcggcaaacg
cgggaatcggcccccaagcagtatggcgtcacaaaacccttgtctcagtctggaccctca
gaggcggataaattgagaactaaggagttggaaaagtttttggacgattctgggctatac
gagagtgctgtagaggctgtgaagagggaagaggttctaactcgactcaaacagattgtg
aaggattgggtgaaagagattactcgcttgcgaggttatactgatcagatggttgaggat
gctaatgcattgatattaacttttggttcttaccgactaggggtacacggtcctggagct
gatatagatacattatgtgttgggccatcttatgtgatgagggaggacttcttctatgtg
ctgcatgatatcttggctgagatggaagaagttggtgaattgcaaccagtaccagatgcg
catgtccccgtcatgaagttcaagtttgatggaatttcaattgatcttctttatgctagt
attgatcttttggttgtcccagatgatttggacatctctgacgtctcagttttgcataat
gttgacgaggcaactggacggagtctgaatggatgcagggtagcggatcatatacttaag
ctagttcctaatgttaagaatttccggacggctcttcgatgcttaaaattttgggcaaaa
aggcgtggtgtttattcaaatgtgactgggtttcttggtggtgtaaattgggctcttctt
gtggctcgtgtatgccagctttatccaaatgcagtacccagcatgctggtttcccgtttt
ttccgagtttacactcaatggcgctggccaaatccagttatgctttgtgaaatagaggac
aacgaacttggattctctgtttgggatcctcgaaaaaatcattgggatcgtggtcatcat
atgccaataataactcctgcttacccatgcatgaactcaagctacaatgtgtcagctagt
actctgagagttatgatggagcagttccaattcggtaacaagatatgcgaggagatcgag
ctgaataaagcccagtggagtgctctctttgagccgtatttgttttttgaaagctataaa
aactacttgcaggttgatattattgcagctgatgttgatgacctgcgggcctggaagggt
tgggttgaatctcgactaaggcagttgactctgatgatagaacgagacacatatgggaaa
ttacaatgtcatccatatccccatgactatgttgattcttcaaagcagcgtgcgcattgt
gcgttttttatgggtttgcagaggaagccaggagaggtgattcaggaaggtcagcaattt
gacatacgtggaacagttgatgagtttaggcaccagatcactatgtataatttctggaaa
ccgggcatggaaatatatgtgtatcatgtgcgtagaaaacagattccttcttatgtattt
cctgagggttacaaacgaagtcgaccttcaaggcttacaaatcagcagctgggtgataaa
tcatctgaagaaaatggagagatttacaggtctggatctactgaaagatgtctaagaagg
aaaagggaacttgaagggtcggagaacaatcaatcgagtcccgagaaaaggcagtcaatt
agtccttgggagagggattcgatatctcctgaaaacggagatatttacaggtcaggatct
actgaaggatgtctaaacaggaaaagggaacttgaaggatcagagaacaatcaagtgagt
cccgagaaaaggcagtcaattagacctcagcggcgggattcgatgtctcctgatctcctt
ggtgtaaaaaatggcattgcactgaatgagtgctcgtcgacagtgcttgtgagggggatg
gaaggtgctgaagccaatggactctgcctgagtggaagcacctcagaattgctttcagac
aatttgacaaatggaggcactggcatacaaaggaatgagaggcaacaggttgagcagcag
aaagaggtctctgaagagttgaataagctgaatggtgatacgcttttagtggagaatggt
aaagctggatatatcttagacaccagtgtattagcccatgtaaacagtgaactcaccagc
aaggatgttggatctctgtctcttgcaggtaaccatgacaacaaccatggaagtcgtgat
gggtttaaactccaggaatcttcatgggttgattctcacaaatcagataccaagttgctt
gtgaacaatcatggggaaaatagtgcacagttatatggagatgaattgcaggagttagag
ccaaatgctgcccatcatgaagtggtgctgaagtccagggatgcagtcagctcggagtct
gttcagaaaacagtgatgaggcatgttcatcagtttttgttacttgattcctttatgttt
atatgttttctgggccatttttgtctttatgctgctgtttgtcggttgttttatggccat
tttgtagccggttga
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