KEGG   Coffea arabica (coffee): 140004527
Entry
140004527         CDS       T11342                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
carb  Coffea arabica (coffee)
Pathway
carb03020  RNA polymerase
carb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    140004527
  09124 Replication and repair
   03420 Nucleotide excision repair
    140004527
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carb03021]
    140004527
   03400 DNA repair and recombination proteins [BR:carb03400]
    140004527
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     140004527
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      140004527
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 140004527
NCBI-ProteinID: XP_071915476
UniProt: A0A6P6TIE7
LinkDB
Position
7e:complement(14589543..14594305)
AA seq 138 aa
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQMSQVFEKSLQ
YVKRFSRYKNPDSVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKNRGRALD
DDAIEKMLNDLSLVKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcgggagaagaggaagagaacgccgctgagctcaagattggtgatgaatttttgaag
gccaagtgtttgatgaattgtgaagtttccttaattcttgaacataagtatgagcagctt
cagcagatgtcggaggatccaatgaatcaaatgtctcaagtatttgagaagtctctgcag
tatgtgaagcgtttcagccgctacaagaatcctgattctgtcagacaagtccgagagatt
cttagcagataccagcttgctgaatttgagctttgtgtacttggtaatctttgcccagag
actgttgaggaagctattgctatggtcccatcaatcaagaatagaggccgtgcccttgat
gacgatgctattgagaagatgctgaatgacttatctctggtcaagaaatttgagtag

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