Coffea arabica (coffee): 140005085
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Entry
140005085 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140005085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
140005085
03009 Ribosome biogenesis [BR:
carb03009
]
140005085
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140005085
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
140005085
Complex B
140005085
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
140005085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
140005085
NCBI-ProteinID:
XP_071901363
UniProt:
A0ABM4U263
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Position
4c:1605113..1610236
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AA seq
501 aa
AA seq
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MSRYDSRYADPGSYRDRRSDSGFGGSSNYRSTTTTTSRRHNDVADSPRKSELDGLTPFEK
NFYVEAPSVAAMSEGEVEEYRRRREITVEGRDVPYPVKSFQDVGFPDYVMQEIERAGFSE
PTPIQAQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPT
RELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH
TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFN
AYKVIIGSADLKANHAIRQNVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKNPIMTATDVAARGLDVKDVKYVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKDLINILQEAGQKVSPELASMGRGA
PPPPAAHGSFRDRGRGGRPWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgctacgccgaccccggctcataccgagaccgccggagtgat
tcaggtttcggagggagctcgaactaccggtcgacgacgaccacaacgagtaggagacac
aatgatgttgcggattcgccgcgaaaatcggagttggacgggttgactccgttcgagaag
aatttctacgtggaggcgccatctgtcgccgcaatgtcggagggtgaggtggaggagtac
agaaggcggcgggaaataactgttgaaggccgggatgtcccctacccggttaagagtttc
caagacgtaggttttccagattatgtcatgcaagagattgaaagagctggcttttctgaa
cctacacctattcaagctcagggatggcctatggctttgaggggccgtgatctcataggt
attgcagaaactggatcagggaagacattagcgtatctattgcctgcaattgtgcatgtt
aatgctcagccgtttttagcacctggagatggtccaattgttttagttttagctccaact
cgtgaacttgctgttcagattcaacaagaagctactaaatttggtgcttcatcaaggatt
aagaatacctgcatttatggtggggttcctaagggacctcaagttcgtgatcttcagaaa
ggtgttgaaattgttattgctacacctggacggttgattgatatgctggaatctcatcat
acaaacctgcgaagggttacatatcttgtgttggatgaggcagatcggatgctagatatg
ggctttgaacctcagattcgaaaaattgtttctcagattcgtccagaccgtcagactctt
tactggagtgctacatggcccaaggaagttgagcaacttgcaaggcaatttcttttcaat
gcatacaaagtgatcataggttcagcagatttgaaggctaaccatgcaattcgtcagaat
gtggacatcgtctctgagagtcagaaatacaataaattagtgaagttgctagaggacatt
atggatggtagccgaatattgatattcatggacactaaaaaggggtgtgatcaaatcact
cgacaacttagaatggatggttggcctgcactatctattcatggagataagagtcaagca
gaaagagattgggttctctctgaattcaaagctggcaagaatccgataatgacggcaact
gatgttgctgctcgaggtctagacgtgaaggatgtcaagtatgttatcaattatgacttt
cctggatctctcgaagattatgtccaccgcattggacgaactggaagggctggtgccaaa
gggacggcatatacattcttcacagttgccaatgcgagatttgcaaaggacctcatcaac
atccttcaggaggctggacagaaagttagtcctgagctggcatctatgggacgtggtgca
cctcctcctccagcagcccatgggagttttcgagatcgggggaggggaggtcggccttgg
agctga
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