Coffea arabica (coffee): 140005090
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Entry
140005090 CDS
T11342
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
carb04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140005090
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
140005090
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
carb01009
]
140005090
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140005090
03036 Chromosome and associated proteins [BR:
carb03036
]
140005090
Protein phosphatases and associated proteins [BR:
carb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
140005090
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
140005090
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
140005090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
140005090
NCBI-ProteinID:
XP_071901374
UniProt:
A0ABM4U273
LinkDB
All DBs
Position
4c
Genome browser
AA seq
519 aa
AA seq
DB search
MNGGDGGEVTAAPPAGPPPPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGD
RGGRVVLFERTDMKEHGGSRRDIERMDYPVSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK
INKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNIDPSKVVGNGSASSSTVSS
SPKPYLANGAYPDRSYSCLNNDMTFPPGGIPSLRLPVVVTSTETSLVARCRRVYAHAHDY
HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH
CNMLAYSSSKGSIRLIDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFAKDGR
YILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVA
TGSYSNLFRVFGCATGSTEAATLEASKNPMRRQVQTPTRPSRSLSSSITRVVRRGAESPG
VDANGNSFDFTTKLLHLAWHPVENSIACAAANSLYMYYA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtggtgatggtggagaggtcacggcagctcctccggcggggccaccaccgccg
ctcgagtggaaattctctcaggttttcggtgaacgcacggcgggcgaagaagttcaggaa
gttgacatcatctcagcaattgagtttgataaaactggcgaccatcttgctaccggtgac
cgtggaggcagagtggtgttgtttgagaggacagatatgaaggagcatggtggaagtcga
agagacatagaaaggatggattatccagtgagtcggcatccagaattccgttacaagaca
gaattccagagtcatgaacctgagtttgactatctgaagagtctggagattgaggaaaaa
atcaacaagattcggtggtgccaaacagctaatggtgccctctttcttctgtccactaat
gataaaacaatcaagttttggaaggtccaagagaagaaagtcaagaaaatttctgagatg
aatattgatccatctaaggttgttggaaatggtagtgcttctagttctactgtttcatcc
agtcctaagccatatcttgcaaatggagcctaccccgatagatcatatagttgcttgaac
aatgacatgacatttccacctgggggcattccatcactgcgtttgcctgtggtagttaca
agcactgaaaccagtcttgttgcaagatgcagaagggtttatgctcatgctcatgactat
catattaattcaatttcaaataacagtgatggtgaaacatttatatcagctgatgactta
cgaataaacctttggaacttggaaattagtaaccaaagtttcaatatagttgatgttaag
ccagcaaatatggaggatctaactgaggtcataacttcagcagagtttcaccctacccac
tgtaacatgttagcatatagtagttcaaagggatcaattcgtctgattgatttgcggcag
tcagctttgtgtgattcacattctaaattgtttgaggaacaggaggcacctggttcaaga
tcatttttcactgagataatagcttcaatttcagatattaaatttgcaaaggatggtaga
tatattcttagtcgtgattacatgacccttaagctatgggacattaatatggattctggt
cctgttgcaaccttccaggttcatgagtatctaagaccaaagctgtgtgacttatatgaa
aatgattccatctttgataagtttgagtgttgcctgagtggtgacggtctgcgtgtggca
actggttcttacagcaatctcttccgcgttttcggttgtgcgacaggtagtactgaagca
gctactcttgaagcaagcaaaaacccaatgaggagacaagtccagactcctacaaggcct
tcaagatccctgagcagcagtattacccgtgttgtgagaagaggagcagaaagtccagga
gttgatgcaaatgggaactcgtttgattttacaacgaagctgctccacctggcatggcat
ccagtggaaaactcaattgcttgtgcagctgccaacagcttgtacatgtattatgcgtga
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integrated database retrieval system
