Coffea arabica (coffee): 140005157
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Entry
140005157 CDS
T11342
Name
(RefSeq) ubiquitin receptor RAD23b-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
carb Coffea arabica (coffee)
Pathway
carb03420
Nucleotide excision repair
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
140005157
09124 Replication and repair
03420 Nucleotide excision repair
140005157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
carb03051
]
140005157
03400 DNA repair and recombination proteins [BR:
carb03400
]
140005157
Proteasome [BR:
carb03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
140005157
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
140005157
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
TECR_N
UBA_3
UBA_RAD5A
Ubiquitin_2
Rad60-SLD_2
MmeI_C
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
140005157
NCBI-ProteinID:
XP_071901669
UniProt:
A0ABM4U317
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Position
4c:complement(4232102..4236567)
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AA seq
370 aa
AA seq
DB search
MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDMKGKDSYPCGQQLLIHNGKVLKDESTLA
ENKVSEDGFLVVMLSKSKASGSGGTSSTLPTATAAAISNPTPPEAPPPVLATKTNASASN
HEPLPAGAPSNAYGEAASNLVAGTNLEQTIQQIMDMGGGTWDKETVTRALRAAYNNPERA
VDYLYSGIPEMAEVAVPVAPTGTNSATQTGLDSDVAVSGAPNSSPLNLFPQENLSGDAGA
GLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRLIEEHHQEFLQLISEP
MDGSEGDLFDQAEQDMPHAVSVTPAEQEIIERLEAMGFDRALVIEAFLACDRNEELAINY
LLENAGDYED
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactgtgaaaactctcaagggcagccactttgaaattagggttcagcccagc
gacactattatggcagttaaaaagaacattgaagatatgaaaggaaaagatagttatcca
tgtggtcagcagttattgattcataatggaaaggtattgaaagatgaaagtaccttggca
gaaaacaaagtgtctgaagacgggtttctcgtggtcatgctcagtaagagcaaagcttcg
ggctctggtgggacatcttctaccctgcctacagctactgctgcagcaatttctaatcct
acaccacctgaagctcctcctccagtcctggccacaaagaccaatgcatctgcttctaat
cacgagcctctgccagctggtgcaccttccaatgcttatggagaagctgcttctaattta
gttgctggcactaatctcgagcaaacaattcaacaaataatggatatgggtggtggcact
tgggacaaggaaacagttactcgagctcttcgagctgcttataacaatccagaaagagct
gtggactatttatactctggaattccagaaatggcagaagttgctgttccagtggctcct
actgggactaattcagcgacgcaaactggtttggactctgatgttgctgtttctggggca
cccaactcttctccactaaatttgtttcctcaggagaatctttctggtgatgctggtgca
ggtcttggttctcttgattttcttaggaacaaccaacagttccaagctttgcggtcaatg
gttcaagctaatccgcaaattttacagccaatgcttcaggagctcggaaagcaaaatcct
caactactgagattaatagaggagcaccatcaagagtttcttcaattaatcagcgaacca
atggatggttctgagggggatttatttgatcaggctgagcaggatatgccccatgcagtt
agtgtcacaccagcagagcaggagatcattgagcgacttgaggcaatgggctttgataga
gcccttgtcattgaggccttcctagcatgtgaccgcaacgaggaactggcaatcaattat
ctacttgagaatgctggagattatgaagattga
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