Coffea arabica (coffee): 140006085
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Entry
140006085 CDS
T11342
Name
(RefSeq) cleavage stimulation factor subunit 50-like isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140006085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140006085
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140006085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_NWD2_C
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
140006085
NCBI-ProteinID:
XP_071903862
UniProt:
A0A6P6X6S6
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Position
4e:20188624..20195816
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AA seq
439 aa
AA seq
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MESTNNNNRLEQTLQDGKLYRHVNSLIVAHLRDNNLNQAASTVALATMTPLNVEAPPSKL
LELVAKGLAVEKDEMLRGVSTAAFLESNRHAGYDSIAAPRAALDFSAMLDTKGSSKSFPK
HETRHVSEHKNVARCARFSPDGRFLATGSVDTSIKLFEISKIKQMMLRDAGDGPVRPIIG
TFYDHVQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKTAAKKAFRVIQDTHIVRSVSFHP
SGEFLLAGTDHPVAHLYDVNTFQCYLSANIQDIGLNGAINQVRYSSTGGMYVTASKDGAI
RLWDGISANCGRTIIGAHGAAEATSADLTKDEKYVLSCGKDSTVKLWEVGTGRLVKQYLG
ATHTQLRCQAVFNDTEEFILSIDEATNEIVVWDALTAEKVARWPSNHVGAPQWLEHSPTE
AAFASCGADRSIRFWKEIL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggagagcacgaataacaataacaggttggagcagacacttcaggatggaaagctctat
cgacacgttaattcactaattgttgctcatcttcgtgacaacaatctcaatcaggctgca
agtacggtggctttggctactatgactccattaaatgttgaagctcctcctagcaagctt
cttgaactggtggccaagggtcttgcagtggagaaagatgagatgttaagaggagtttct
acagctgcatttttagagtcaaatagacatgcaggatatgattccattgcagctccacgt
gccgctcttgatttcagtgccatgcttgatactaaaggatcatcaaagagctttccaaag
catgagacacgacatgtctcagagcacaagaatgtcgcaagatgtgcaagatttagtcct
gatggaaggtttcttgcaactggcagtgttgacacatcaattaaactgtttgagatatca
aaaatcaagcaaatgatgctgcgagatgcaggagatggccctgtacggcctatcataggg
acattctatgatcacgttcaaccaataaatgacttggattttcatcctcaaaatacagtt
cttgtatccggggctaaggatcatacaataaagttctttgatttttccaagacggcagca
aagaaagcatttagagttattcaggatactcacattgtgaggtcagtatcatttcaccct
tctggcgaatttcttttggcaggaactgatcatccagttgcacatttatatgatgttaat
acttttcaatgttatttatccgcaaatatccaagatattggtcttaatggagccataaat
caggtgaggtactcatctactggtggtatgtatgttactgcatctaaggatggtgctata
cggttgtgggatgggataagtgccaattgtgggcgcactataattggtgcacatggagca
gctgaggccacaagtgcagatttgacaaaggacgaaaagtatgttctctcttgtggaaaa
gattctactgtgaagctctgggaagttggcactggaagattagttaagcaatatcttgga
gccacacatacacagttgcggtgccaggcagtttttaatgacacagaagagttcatcttg
tccattgatgaagccacaaatgagattgtagtttgggatgcacttacagcagaaaaagtg
gctcgatggccttcaaaccatgttggtgctccacaatggttggagcattcaccaacagag
gcagcttttgcttcttgtggggctgataggtcaatacggttctggaaggagattctctag
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