KEGG   Coffea arabica (coffee): 140007385
Entry
140007385         CDS       T11342                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
carb  Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:carb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:carb03009]
    140007385
Ribosome biogenesis [BR:carb03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    140007385
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I Beta-prop_EML_2 NBCH_WD40 WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 ANAPC4_WD40 Beta-prop_EML Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th WDR54 PQQ_2 PQQ
Other DBs
NCBI-GeneID: 140007385
NCBI-ProteinID: XP_071906239
UniProt: A0ABM4UG24
LinkDB
Position
5c:complement(45639666..45640934)
AA seq 422 aa
MASFVQEFVLTSSPDGRITAYDAYSGSSLGQYNGSRTPRKGLTMIGKKLIAASHVCSDTG
LGSVHLYHWWYSAPFHQLPMPEPVAPLVATRDGSYLFAGGVSGHVHSISLPSGDIILSVA
AHSKAITCLEINDDGSLLFSGSDDGTIAVFPIHRLVDSFSSRSSSYSAPLQRFVGHQSSV
TTITTGTGGCNCTIISCSSDCTCKFWGLMHTSPLRSITFPCTIWEVKVDPLESEFYVAGS
DGLVYKCALKVRSRMMMKQGPQLITWKRQHDDAITSMATMNWGKNLVTASEDGKLCFWDV
GRGDLIKVVDQEKTGSISNVMAVAAGVNGHVSAALARMRKSVAGFGRWDLGFSGKKDLYV
PITEMKEMEEHLAVSVVDRKRSIDTLELALGAYERVLKLMHKEVKGSASSSNSVDQDKTE
GN
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcatcatttgtgcaagagtttgtccttactagctcccctgatggtcgaatcactgct
tatgatgcttactcaggttctagcctgggtcagtacaatggcagtcgaacgcctcgtaaa
gggctaaccatgatcggtaagaagctgattgctgcttctcatgtttgttcagacactggc
cttggctcagttcacctctatcactggtggtactccgctcccttccatcaactccccatg
cctgaacctgttgcaccccttgttgctactcgagacggatcgtatctctttgctggtggt
gtatctggtcatgtacactccatctcactcccttcaggagatataattctgtctgttgct
gcccactccaaagccataacctgcctggaaatcaacgacgatggatcacttcttttctca
ggcagtgatgacggaaccattgcagtgttccctatacatcggcttgtggattcattttct
tccagaagttcaagctattcggcaccactgcaaagattcgttggccatcaatcttcagta
acgaccatcacaacaggcaccggtggatgcaattgcaccataatttcgtgctcgtcagat
tgcacgtgcaagttctggggcctcatgcacacatcacctctccgttcaattacatttcca
tgtacaatatgggaggtgaaagtagaccccctggagtcagagttctatgttgcagggtca
gatggattggtgtacaaatgtgcacttaaggtgagatccagaatgatgatgaaacaagga
cctcaattgatcacttggaagaggcagcatgatgatgcaatcacatccatggccacaatg
aactggggaaagaatcttgttacagcatcagaagatggaaaactttgcttttgggacgtg
ggacgaggagatttgatcaaagttgttgatcaagagaaaacgggaagcatcagtaatgtg
atggcagtagccgcaggagtaaatggtcatgtcagtgcagctttggctaggatgagaaaa
agtgtcgctggttttggtagatgggatttgggcttctctggtaagaaggacctgtatgtt
ccaatcacggagatgaaggaaatggaagagcatttggcagtttcagtagtggacaggaaa
agatccattgatacgctagaattggcccttggagcttatgagagagtgttgaagctcatg
cacaaggaagtaaaaggaagtgcaagcagcagtaacagtgttgatcaagacaaaaccgaa
ggcaactaa

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