Coffea arabica (coffee): 140007887
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Entry
140007887 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13095
splicing factor 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140007887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
140007887
Spliceosome [BR:
carb03041
]
Complex A
Other components
Complex A specific factors
140007887
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rx_N
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
140007887
NCBI-ProteinID:
XP_071907620
UniProt:
A0ABM4UK02
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Position
1e:3535813..3547011
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AA seq
802 aa
AA seq
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MADTAVSATIQVALQSVVSLAADHVNLVREFPTELERLNKSAEMIRGFLAGADEQMHSSD
VKIWLKQLEEEVFKADNVLDELNCENLRRKVKYRNQLTKKKELELLELERRDATGEILKL
NPSYKVPADYKPVLKEAKVPIPIKENAAYNMVGLIFGPANDTQKRLEKETGAKVRVYGTR
AVTGEKVEVTTPDGNETCGSYDELHVHVSADTYEKIDAAVALIELLVTPVSTFQGNPASI
TVTSTATSGDNVNSGAPSQGTPGTNVPAGVASGVAQPSVGSGPAPSPNHFQQYSGPWFPV
GAPQTHAFPSSGFAAAPVHLSPSQFNPSSMLPIFGPRPVVTVGFTPVPQNPSLITSGPQQ
PQVLQRPYISHPPPLSASQPAPIQSNVTSPQLSTNQSAPTGPTQFGSSISISYQPPYAGS
SIVPVNTPTSIGAGNMMSMTPATTGLQGHPSMASHPLAVSRAAPPNIFPITQQSALQSAG
AAVNHPANVPYFNSSSHFQQGLSLSPLPSAAKVPGPMQSVMPRAVIPNSSPNVVPGSTPL
LSPVTSSSTLLHPASGIPNSGPAGAVSFNAINPANMTAPRPQQPSSNDFTFQPHRPHNPA
LEVAHRPNTQPILLHPNQSAQPYQESQISPVQPGMHMLRLPPANPGFSRPNVGNQMMQPR
AQTSVNFPSSPTALLGPPRHAPFPGSNAAPLLQPRNFNLDPPFVNADGIPRAGGPMQIQQ
NYPPSATRPPSFVAPNQHINSNISFQPAAGLSSRASGVQQVYDPFSPTSVSLNTHLSSNR
AKIQKQESDPEYEDLMASVGVK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggctgatactgctgttagtgctactattcaggttgcattgcagtcggttgtttccctt
gccgctgatcatgttaatctggttcgtgaattcccaacggagctggagagactcaacaaa
tctgctgaaatgattcgaggcttcttggctggtgccgacgagcaaatgcatagctcagac
gtgaaaatttggctcaagcagctggaagaagaggttttcaaagctgacaatgtgctggac
gagctcaactgtgaaaatcttcgtcggaaggtgaagtatcgaaatcaactcacgaaaaag
aaggaattggagctattggagcttgaaaggcgcgatgctactggtgaaatactgaagtta
aatccgagctacaaggttcctgctgattataaacctgtgctgaaagaggcaaaagttccg
atccctattaaagagaatgctgcatataatatggttggtttaatttttgggccagcaaat
gacactcaaaagcgactggaaaaggaaactggagctaaagtacgagtttatggaacaaga
gcagttactggagaaaaggttgaagttactactcctgatggtaatgaaacatgtggtagt
tatgatgagttgcacgttcatgtatcagctgacacatatgaaaagattgatgctgcggtg
gctcttattgaactgctagtcaccccagtttcgacttttcaggggaatcctgcttccatt
actgtaacatcaactgcaacatctggtgacaatgtgaatagtggtgctccgagtcaaggc
acacctggtactaatgtgcctgctggtgtggcaagtggagtggctcagccaagtgtagga
tctggaccagcaccttcacctaatcactttcagcagtactcagggccttggtttcctgtg
ggtgcacctcagacacatgcctttccatcatcaggttttgctgcggctcctgtccatttg
tctccatcacagttcaatccctcaagtatgctgccaatatttggtcctcggccagttgtc
acagtgggatttactccggttccccagaatccttcacttattacctccgggccacagcaa
ccacaagttctgcagaggccatacatttcacatccgccacctttgtcagcttcacaacct
gcacctattcaatcaaatgtcacatcaccacaattatctactaaccagtcagcaccaact
gggcccacccagtttgggagttcaatatctatttcttaccagccaccttatgctggatca
tctatagtaccagtgaacactccaacatccattggagctggaaatatgatgtcaatgacc
cctgcaacaactggtctgcagggccacccctccatggcttctcatcctttggctgtgtcc
agagctgcaccgccaaatatctttccaattacccagcaatctgctttgcagtcagctggt
gctgcagttaatcatcccgcaaatgtcccatacttcaactctagttcccacttccaacag
gggctttcactttctccactaccttcagcagcaaaagtacctggtcccatgcagtctgtt
atgccacgagctgtgatacctaattcatctcccaatgtggtaccaggatccacccctctt
ctttcaccagtgacatcttcatcaacactactacatccagcttcaggaattcctaattct
ggtcctgctggtgctgtcagttttaatgccattaaccctgcaaatatgactgctcccaga
ccacagcaacccagctcaaatgattttacttttcagcctcaccggccacacaatccagcc
cttgaagttgctcatagaccaaatactcaacctatacttttacatccaaatcaatcagca
cagccatatcaggaatctcagatttcacctgttcagccaggaatgcacatgttgagacta
ccacctgcaaatccagggttttctaggcctaatgttggcaatcaaatgatgcagcctaga
gctcaaacgtctgttaactttcccagtagtccaacagcgcttctgggtccacctaggcat
gcaccatttccaggttcgaatgctgctcctctactgcaaccaagaaacttcaatttagat
cccccattcgtcaatgcagatggaattcctcgagcagggggcccaatgcaaattcagcaa
aactaccctccatcggcaactaggccgccaagttttgttgctccaaatcaacatattaac
agtaatatttcctttcaacctgctgctgggctatcttctagagcttctggagtacagcaa
gtgtatgatcccttctcgccaacatctgtttctcttaatactcatttaagcagtaacaga
gcaaagattcagaaacaggagagtgatccagagtacgaagacctgatggcctcagtcggt
gtaaagtaa
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