Coffea arabica (coffee): 140007925
Help
Entry
140007925 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13095
splicing factor 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140007925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
140007925
Spliceosome [BR:
carb03041
]
Complex A
Other components
Complex A specific factors
140007925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
Motif
Other DBs
NCBI-GeneID:
140007925
NCBI-ProteinID:
XP_071907697
UniProt:
A0ABM4UK97
LinkDB
All DBs
Position
1e:complement(3772721..3782955)
Genome browser
AA seq
652 aa
AA seq
DB search
MVGLIFGPANDTQKRLEKETGAKVRVYGTRAVTGEKVEVTTPDGNETCGSYDELHVHVSA
DTYEKIDAAVALIELLVTPVSTFQGNPASITVTSTATSGDNVNSGAPSQGTPGTNVPAGV
ASGVAQPSVGSGPAPSPNHFQQYSGPWFPVGAPQTHAFPSSGFAAAPVHLSPSQFNPSSM
LPIFGPRPVVTVGFTPVPQNPSLITSGPQQPQVLQRPYISHPPPLSASQPAPIQSNVTSP
QLSTNQSAPTGPTQFGSSISISYQPPYAGSSIVPVNTPTSIGAGNMMSMTPATTGLQGHP
SMASHPLAVSRAAPPNIFPITQQSALQSAGAAVNHPANVPYFNSSSHFQQGLSLSPLPSA
AKVPGPMQSVMPRAVIPNSSPNVVPGSTPLLSPVTSSSTLLHPASGIPNSGPAGAVSFNA
INPANMTAPRPQQPSSNDFTFQPHRPHNPALEVAHRPNTQPILLHPNQSAQPYQESQISP
VQPGMHMLRLPPANPGFSRPNVGNQMMQPRAQTSVNFPSSPTALLGPPRHAPFPGSNAAP
LLQPRNFNLDPPFVNADGIPRAGGPMQIQQNYPPSATRPPSFVAPNQHINSNISFQPAAG
LSSRASGVQQVYDPFSPTSVSLNTHLSSNRAKIQKQESDPEYEDLMASVGVK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggttggtttaatttttgggccagcaaatgacactcaaaagcgactggaaaaggaaact
ggagctaaagtacgagtttatggaacaagagcagttactggagaaaaggttgaagttact
actcctgatggtaatgaaacatgtggtagttatgatgagttgcacgttcatgtatcagct
gacacatatgaaaagattgatgctgcggtggctcttattgaactgctagtcaccccagtt
tcgacttttcaggggaatcctgcttccattactgtaacatcaactgcaacatctggtgac
aatgtgaatagtggtgctccgagtcaaggcacacctggtactaatgtgcctgctggtgtg
gcaagtggagtggctcagccaagtgtaggatctggaccagcaccttcacctaatcacttt
cagcagtactcagggccttggtttcctgtgggtgcacctcagacacatgcctttccatca
tcaggttttgctgcggctcctgtccatttgtctccatcacagttcaatccctcaagtatg
ctgccaatatttggtcctcggccagttgtcacagtgggatttactccggttccccagaat
ccttcacttattacctccgggccacagcaaccacaagttctgcagaggccatacatttca
catccgccacctttgtcagcttcacaacctgcacctattcaatcaaatgtcacatcacca
caattatctactaaccagtcagcaccaactgggcccacccagtttgggagttcaatatct
atttcttaccagccaccttatgctggatcatctatagtaccagtgaacactccaacatcc
attggagctggaaatatgatgtcaatgacccctgcaacaactggtctgcagggccacccc
tccatggcttctcatcctttggctgtgtccagagctgcaccgccaaatatctttccaatt
acccagcaatctgctttgcagtcagctggtgctgcagttaatcatcccgcaaatgtccca
tacttcaactctagttcccacttccaacaggggctttcactttctccactaccttcagca
gcaaaagtacctggtcccatgcagtctgttatgccacgagctgtgatacctaattcatct
cccaatgtggtaccaggatccacccctcttctttcaccagtgacatcttcatcaacacta
ctacatccagcttcaggaattcctaattctggtcctgctggtgctgtcagttttaatgcc
attaaccctgcaaatatgactgctcccagaccacagcaacccagctcaaatgattttact
tttcagcctcaccggccacacaatccagcccttgaagttgctcatagaccaaatactcaa
cctatacttttacatccaaatcaatcagcacagccatatcaggaatctcagatttcacct
gttcagccaggaatgcacatgttgagactaccacctgcaaatccagggttttctaggcct
aatgttggcaatcaaatgatgcagcctagagctcaaacgtctgttaactttcccagtagt
ccaacagcgcttctgggtccacctaggcatgcaccatttccaggttcgaatgctgctcct
ctactgcaaccaagaaacttcaatttagatcccccattcgtcaatgcagatggaattcct
cgagcagggggcccaatgcaaattcagcaaaactaccctccatcggcaactaggccgcca
agttttgttgctccaaatcaacatattaacagtaatatttcctttcaacctgctgctggg
ctatcttctagagcttctggagtacagcaagtgtatgatcccttctcgccaacatctgtt
tctcttaatactcatttaagcagtaacagagcaaagattcagaaacaggagagtgatcca
gagtacgaagacctgatggcctcagtcggtgtaaagtaa
DBGET
integrated database retrieval system
