Coffea arabica (coffee): 140009308
Help
Entry
140009308 CDS
T11342
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
carb Coffea arabica (coffee)
Pathway
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
140009308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140009308
03009 Ribosome biogenesis [BR:
carb03009
]
140009308
04131 Membrane trafficking [BR:
carb04131
]
140009308
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
carb04147
]
140009308
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
140009308
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
140009308
Membrane trafficking [BR:
carb04131
]
SNARE
SNARE associated proteins
Others
140009308
Autophagy
Aggrephagy
Other aggrephagy associated proteins
140009308
Exosome [BR:
carb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
140009308
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
CDC48_2
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
ATPase_2
Parvo_NS1
AAA_18
nSTAND_NTPase5
ABC_tran
Viral_helicase1
NB-ARC
AAA_7
NACHT
Vps4_C
IstB_IS21
DUF815
TsaE
Zeta_toxin
AAA_lid_PRS2_C
AAA_24
Zot
Motif
Other DBs
NCBI-GeneID:
140009308
NCBI-ProteinID:
XP_071910554
UniProt:
A0ABM4UTE1
LinkDB
All DBs
Position
6e
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKSPNRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRRDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIESDPAEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKASLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFSE
TSAGATGADPFAASAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaccaggctgaatcttccgactcgaaaggaacaaagagggatttcagtactgcg
attttagagaggaagaagtcgcccaatcggctcgttgtcgatgaggcaatcaacgatgat
aattccgtcgtggccctacacccggaaaccatggaaaagcttcagcttttccgcggcgac
accatcttgattaagggaaagaaaagaagggatacaatttgcattgcccttgctgatgac
acttgtgatgaaccaaagattaggatgaacaaggtcgtcaggtcaaacctcagggttagg
cttggagatgtggtttccgtgcatcagtgtcctgatgtcaagtatgggaaacgtgttcac
atccttcccattgatgatactgttgaaggggttactggaaacctttttgatgcttatttg
aagccctatttcttggaggcatatcgtcctgtcaggaagggtgacctcttccttgtaagg
ggaggaatgagaagcgtagaattcaaagtgattgaatctgaccccgctgagtattgtgtg
gttgcacctgatactgaaatcttttgtgagggagaaccagtgcgaagggaggatgaagat
cggttggatgaggttggttatgatgatgttggaggagttcgtaaacagatggctcagatt
cgtgaactggtagagttgcctttgaggcatccacaactctttaaatcaattggtgtgaag
cccccaaaaggaattctgctttatggtcctccaggatctggaaagaccttgatagcccga
gctgtggctaatgaaactggtgctttcttcttctgcattaatggacctgagatcatgtca
aagctggcgggagaaagtgaaagcaatctccggaaagcatttgaggaagccgagaagaat
gccccatcaattatttttatcgatgaaattgattctattgctcctaagcgtgagaagacg
catggagaagttgagagaagaattgtctctcagctcttgacgcttatggatgggcttaag
tccagagcccacgttattgtcataggtgctactaaccgtcccaatagcattgatcctgcc
ctgagaaggtttgggagatttgacagggaaatagacatcggtgttccagatgaagttggg
cggcttgaggttcttcgcattcacacaaagaatatgaagcttgctgaagatgttgatttg
gaaagaatttccaaggacacccatggttatgttggtgctgatttagcagctttgtgtact
gaggctgcactccagtgcatcagggagaaaatggatgtgattgacctggaagatgattct
attgatgcggagatactcaactccatggccgtcaccaatgagcacttccagactgcactt
gggacaagcaacccttctgctctccgagaaactgtggttgaagttccaaatgtcagctgg
gatgatattggaggccttgagaatgttaaacgagagcttcaagagactgttcaataccca
gtggagcatcctgagaagtttgagaaatttggaatgtccccctcaaagggagttcttttc
tacggcccaccaggctgtggcaaaactttgctggcaaaggctattgcaaacgagtgtcaa
gctaactttattagcattaagggtcctgaattacttaccatgtggtttggagagagtgag
gccaacgtcagagaaatttttgacaaggctcgccaatctgctccttgtgtactcttcttt
gatgaattggattcaattgctactcagagaggaagtagtgtaggagatgctggaggtgct
gctgatagggttttgaatcagctgctaactgaaatggatggaatgaatgcaaagaaaact
gttttcattattggtgccaccaacagacctgatataattgaccctgcacttttgaggcct
ggacgactcgatcagttgatttatatccctcttccagatgaagattctcgccatcagata
ttcaaggcgagcctcaggaaatcgcctgtttctaaagacgtagacttgagagctctagcc
aagtatacccaaggttttagtggagctgatattacagagatatgtcaacgtgcctgtaaa
tatgctatcagagagaatattgaaaaagatattgagagggagaggaggaggagagataat
cctgaggcaatggaggaggacgtggatgatgaagttgctgaaatcaaggctgctcacttt
gaggaatccatgaagtttgctcgtaggagtgtcagtgatgcagacatacgtaaatatcag
gcatttgctcaaaccttgcagcagtctagagggtttggtaccgaattccgattctctgag
accagtgcaggtgctacaggcgctgacccttttgcagcatcggctggtggagctgatgaa
gatgacctttatagttag
DBGET
integrated database retrieval system
