Coffea arabica (coffee): 140009360
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Entry
140009360 CDS
T11342
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140009360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140009360
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140009360
mRNA degradation factors
5'-3' decay
Decapping complex
140009360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
140009360
NCBI-ProteinID:
XP_071910705
UniProt:
A0A6P6SGF1
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Position
6e:4840269..4844570
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AA seq
376 aa
AA seq
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MSSSLSTSTTSSLTGKLTPNLDQHCTKKLNLTVLQRIDPFIEEILMIAAHVTLYEFNLDL
NQWSRKDVEGSLFVVKRNTQPRFQFIVMNRLSTENLVEDLLSDFEFEIQVPYLLYRNAAQ
EVNGIWFYNTVECEEVANLFTRILNAYSKVPPKPQATPTKSEFEELEAVPTSAVIEGPLE
PSVNPTISSVQPEDSSFENFFSTAMNMQNSFSKGLQSGQLYHTSAPTAPLSHVSNVTPSY
APTVQAQPFSGTSSSVPMMTTHDGSDHISSNRVANLVKPSSFLVTSSSSSLLIPPVSSIS
SPALHPLLNLQRPHGTPMLQPFPPPTPPPSLTANPTTVTEYGPVTREKVRDALLMLVQDN
QFIDMFYQALLKAHQS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgttgtccacttcaacgacctcctcgctcaccggaaagctgactcctaat
ttggaccagcactgcactaagaagctcaatctcacggtcctccaaagaattgaccccttc
attgaagagatcttgatgatcgctgctcacgtcactctctacgaattcaacctcgacctc
aatcagtggagtcgaaaggatgttgaagggtctctctttgtagttaaaaggaacacacag
ccacggtttcagttcattgtcatgaaccggctgagtacagaaaatcttgtggaggatctg
ctgagcgattttgagtttgaaattcaagttccatacttgttataccgcaatgctgcccaa
gaagtgaacggtatttggttctacaatactgtggaatgtgaggaggttgccaatctcttc
actaggattctaaatgcatactcaaaagttcctccaaagccacaagcaactccgaccaaa
agtgagtttgaagaacttgaagcagtgccaacaagtgcagtgattgagggaccactggaa
ccatcagttaatcccaccatttcatcagttcagcctgaggattcttcttttgaaaacttc
ttcagtacggctatgaatatgcaaaatagcttctcaaagggcttacaatctggacaactt
tatcatactagtgcaccaactgctcctttatcccatgtctcaaatgtcaccccctcttat
gctccaactgtccaagcccaaccattttctggaacctcttcgtcagttccaatgatgacc
acgcatgatggatctgaccatatcagcagtaatagagttgctaatctagtcaagccttct
tcttttcttgtaacctcttcatcatcttcattgttgatcccacctgtctcatctatttca
tctcctgctcttcatcctctattgaacctgcagcgtccgcatggtaccccaatgcttcag
ccattccctcctccaacaccacctccatctcttactgcaaatcccacaactgtgacagaa
tatggacctgtgacaagggaaaaagttagagatgcacttctaatgcttgttcaggataac
caatttattgacatgttttaccaagcattgctgaaagcgcatcagtcatga
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