Coffea arabica (coffee): 140009476
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Entry
140009476 CDS
T11342
Name
(RefSeq) oligouridylate-binding protein 1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140009476
03041 Spliceosome [BR:
carb03041
]
140009476
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
140009476
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
140009476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_PARP14_3
RRM_5
RRM_7
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
140009476
NCBI-ProteinID:
XP_071911254
UniProt:
A0ABM4UVE0
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Position
6e:10069070..10075954
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AA seq
409 aa
AA seq
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MQQQRLKQQQQQQQQALMQQSLYHPGLLAHTQIEPILSGNLPPRFDSSTCRSVYVGNIHP
QVTEPLLQEVFSSTGPLEGCKLIRKEKSSYGFVDYFDRRSAALAIVTLNGRHLFGQPIKV
NWAYASAQREDTSNHFNIFVGDLSPEVTDSTLFACFSVYPSCSDARVMWDQKTGRSRGFG
FVSFRSQQEAQSAINDLNGKWLGSRQIRCNWAAKGAANGDDKQSLDAKSVVELTNGTSED
GQEKSGEDAPENNPQYTTVYVGNLAPEVTSVDLHRHFHSLGAGVIEDVRVQRDKGFGFVR
FSNHAEAARAIQLGNACILFGKPIKCSWGSKPTPPGTSSTPLPLPAVAHMPGFSATDLAA
YERQIALSKMAGAQALMHPQGQRIGAASQAIYDGGYPGIATTQPPIYYQ
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagaggctgaagcagcagcagcagcagcaacaacaagcattgatgcagcaa
tctctctaccacccgggtcttttagctcatactcagatagagcctatattgagtggaaat
ctgcctccaagatttgattcaagtacatgccgcagtgtatatgttgggaatatccaccca
caagtgacagaaccacttcttcaagaggttttctctagtactggtcctcttgaaggttgc
aagctcatcagaaaggagaagtcatcctatggttttgtggattactttgaccgaagatca
gctgcacttgctattgtgactcttaatgggcgacatctatttggacaacctataaaagtt
aactgggcatatgccagcgctcagagggaggacacgtcaaatcacttcaacatttttgtt
ggcgaccttagtccagaggttacagattccacattgtttgcttgcttttctgtctatcct
agctgctcagatgcaagagttatgtgggatcaaaagactggtcgttcaagaggttttgga
tttgtttctttccgtagccagcaggaagcccaaagtgctataaatgatttgaatgggaag
tggcttgggagcagacaaatacgctgcaactgggcagcaaaaggtgctgctaacggtgat
gacaaacagagcttagatgcaaaaagtgtggtggaacttacaaatggaacatcagaagat
ggtcaagagaagagtggcgaagatgctccagaaaataatccccaatataccactgtttat
gttggcaatcttgccccagaagtgacatcggtggatctccatcgtcatttccactctctt
ggagctggagtgatcgaagatgtccgtgttcaacgagacaagggttttggttttgtgaga
ttcagcaaccatgccgaagctgctcgtgctattcagttgggaaatgcatgtattctgttt
ggcaagccaatcaagtgctcctggggtagcaagcctactcctcctgggactagttccact
cctctacccctgccagctgtagcgcacatgccaggattttcagccacggatcttgcagcc
tacgagcgacaaattgctttgagtaaaatggctggtgcacaagctttgatgcatccccag
ggtcagagaattggagctgctagccaggcaatctatgatggtggatatccgggtattgct
accacccagccacctatatattatcagtaa
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