Coffea arabica (coffee): 140010389
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Entry
140010389 CDS
T11342
Name
(RefSeq) nuclear pore complex protein NUP58-like
KO
K14307
nucleoporin p58/p45
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140010389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140010389
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140010389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TraG_N
Motif
Other DBs
NCBI-GeneID:
140010389
NCBI-ProteinID:
XP_071913306
UniProt:
A0ABM4V196
LinkDB
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Position
7c:3531317..3536472
Genome browser
AA seq
495 aa
AA seq
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MSFSFTPQQQQQQQPSPLFQTQQLPASTFSLFSQTPQQQPQLQPQPQPQSSPFQFQPQPQ
PQPQLQQQPQPQQQQQLFLFTNDKTPATYSTKWADLHPDSQKFLLQIEERILEYRDESQR
LDQCSRLYDSSVFIGGFELDASRIFQELGGICTAMERERAICQELMSVAKDMLHNTEVAV
RSFMMLRPRFLHSNVGAATSATAPSQATAVAQASSNQAAATSAVPVFDFYSGLPRKPSPF
LQQTVARFEKYIAECRQWIEELEQLLLLDADRNSLDSSSSLLQSLPKVMANVHAFFVHVA
AKAESIHQYIESMKTAYLADQRRRGDGNDPFLEADRRETAKLEAAARRVHPTLHLPAVSQ
PSTQVAGAFSSSTMPGALTALPTSAAISSASSGSGLSLLGTPSGATSSSSLFSTPMTSVP
VSLFGSSGASPESSPFGSLSASTPVVSGAASLFGSTPSSSVSAFTTPFPSGGLTGSGQSF
NTASRTRAKSRTGRR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctcttttactccacagcagcagcagcagcaacaaccgtctccattgttccaa
actcagcagctgccagcctccacattctcactattctctcaaactccccaacagcagccc
caactgcaaccacaaccgcaaccgcagtcgtctcctttccaatttcaacctcaaccgcaa
ccgcagccccagctgcagcagcaaccgcagccgcagcagcagcaacagctgtttctattt
actaacgacaagactccggctacttatagcaccaaatgggctgacctccatccagattct
cagaaattcctcctccaaattgaggagagaatattggagtatagagacgaaagccagcgg
ctggaccagtgtagccgcctgtacgattcatcggtcttcattggtggatttgagctcgat
gctagtcgaatttttcaggagcttggtggaatctgtacagcaatggaacgcgagagggct
atctgtcaagaactaatgtcagtagccaaagatatgctacacaatactgaagttgctgta
cgttcttttatgatgttacgcccacggtttcttcactcaaatgtgggtgctgcaaccagt
gctactgcaccatcccaggctacagcagttgctcaagcttcatctaatcaagcagctgct
acttctgcagtgcctgtttttgatttctatagtgggctacctagaaagccatcacctttt
ttgcagcagactgttgcgagatttgagaagtatatagctgagtgtcgtcagtggattgaa
gagttggagcagttgcttctcttagatgctgatcggaactccttagattctagttcgtct
ttgttgcaatctcttcctaaagtcatggcaaatgtgcatgccttttttgttcatgtagca
gcaaaggcggagagcattcatcagtacattgaatccatgaagactgcgtatcttgctgac
cagcgccgtcgcggggatgggaacgatccatttcttgaagctgatcggcgggaaacagct
aagctagaagctgctgcgcgaagggtacatccaactctgcatttgcctgcggtctcgcag
ccatctactcaagttgctggagcattttcaagctcaacaatgcctggggcattaactgca
ctacctacatctgctgctatttcatcagcttcatctggaagtggtctttctctcttaggt
actccatctggcgcaacttcgtcttcttctctattctctactccgatgacttcagttcca
gtatctttgtttggatcatctggtgcttcccccgagtcatcaccttttggatccctttcg
gcttccactccagttgttagtggtgctgcttcattatttggttcgacaccttcttctagt
gtttcagcatttacaacaccatttccttcaggaggtctaacaggatcagggcaaagcttt
aacactgcatccaggacaagagcaaaaagtcgaaccggccgacgctag
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