Coffea arabica (coffee): 140011184
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Entry
140011184 CDS
T11342
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
carb Coffea arabica (coffee)
Pathway
carb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
140011184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
140011184
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
140011184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
140011184
NCBI-ProteinID:
XP_071915919
UniProt:
A0ABM4V8R2
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Position
7e:complement(9633607..9642772)
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AA seq
790 aa
AA seq
DB search
MHHNGVEDEEKWLAAGITGLQQNAFYMHRALDSSNLKDALKYSAQMLSELRTSRLSPQKY
YELYMRAFDELRKLEIFFKEETKRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDLGSEYEGDAETVSDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYRETVLT
RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLETLLGAFPQLQPSVDIKTVLSRLMD
RLSNYAASSAEVLPEFFQVEAFAKLSNAIGKVIEAQDDMPVIGVVTLYSSLLTFTLQVHP
DRLDFVDQILGACVTKLSGKGKLEDSKSRKQVVALLSAPLQKYNDIDIALKLSNYPHVME
YLDNGTKKEMASVIIQSIMKNKTLISNSEKVEALFELIKGLIKDLEGNLQSELDEEDFHE
EQNSVARLIQMLHNDDPEEMLKIICTVKKHILAGGPKRLPFTVPPLIFNALKLIRRLQNR
DENVAEEDTAATPKKIFQILNQIIEALSSVPVPEVAMRLYLQCAEAADDSDLEPVAYEFF
TQAYLLYEEEISDSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDSIKDGERVLLCLKRALRIANAAQQMANATRGSGGSVALFIEILN
KYLYFFEKGVTQITVASVQSLIELITNEMQGENATPDPTADAFFASTLRFIQFQKDKGGA
VGEKYEAIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgcatcataacggagtcgaagacgaagaaaaatggttggccgccggcatcaccggcctg
cagcaaaacgccttttatatgcatcgagctctggattcgagtaatttgaaggatgcgctc
aagtactcagctcagatgctttcggaacttcggacttcgaggctttctcctcagaaatat
tacgaattatatatgcgagcatttgatgaattaaggaagctagagatttttttcaaggag
gagaccaagcgtggttgctcaatagttgaattgtatgagctggtgcagcatgctggcaac
atattgcccaggctgtatctcctttgtactgttgggtctgtgtacataaaatccaaggaa
gctcctgcaaaggatattcttaaagatcttgtggagatgtgccgtggcatacaacatcct
ttacgtgggctctttctaaggagttacctttctcaagtcagtagggataaattacctgat
ctgggttctgagtatgaaggggatgctgagacagtctcggatgctgtggagtttgtactc
caaaatttcacagagatgaataaactttgggttcgaatgcaacatcagggacctgctcgg
gagaaggagaaacgtgaaaaagagaggagcgagcttcgtgatcttgtggggaagaaccta
catgttctcagccagattgagggtgttgaccttgatatgtaccgagagactgttcttacc
agggtcttggagcaggtagtcaactgcaaggatgagattgcacaatgctacttgatggat
tgcataatccaagtattccctgatgaatatcacttgcagacacttgaaactctactgggt
gctttcccacagcttcagccttctgttgacatcaagacagtgctttctcgactaatggat
aggctgtcaaattatgctgcttcaagtgcagaagttttacctgagtttttccaagtagaa
gcttttgcgaaactgagtaatgccattggcaaggtgattgaggcgcaagatgacatgcca
gttattggagttgtaactttgtattcgtctcttttgacatttacgcttcaagtgcaccca
gatcgtcttgattttgtggatcaaatattgggcgcttgtgtgacgaaactttctgggaaa
ggaaagcttgaagatagcaaatcaagaaaacaagttgttgcacttctaagtgctccactt
cagaaatacaatgatatagatatcgcattgaagctttcaaattatccccatgtgatggag
tacttagacaatggaacaaagaaggagatggccagtgtcataattcaaagtatcatgaaa
aataagacattaatttctaactctgagaaggtcgaggccctgtttgagttaataaagggg
ctcattaaagatttagaagggaatcttcaatctgagcttgatgaggaagactttcatgag
gagcagaattccgttgcacgtcttattcaaatgcttcacaatgatgatccagaagaaatg
cttaagattatatgcactgtgaagaagcatattttggctggaggacctaagaggcttccc
tttacagtccctcccctgatctttaatgctctcaagttgatcagacgactgcaaaatcgg
gacgaaaatgtcgctgaagaagacacagctgctacacctaagaaaatctttcaaatactg
aaccagataattgaagctctgtccagtgttcctgtacctgaagttgctatgcgactttac
ttgcagtgtgctgaggctgctgatgactctgatcttgaacctgttgcctatgagttcttc
acccaagcttatctactatatgaagaagaaatttcggattctaaggctcaagtaactgca
atacacttaataattgggactcttcagcggatgcacgtcttcggcgttgagaacagggat
acgctgacacacaaggctactgggtattctgcgaaacttttgaagaagcctgatcagtgc
agagctgtatatgcttgttcacaccttttctgggttgatgatcaggatagcatcaaggat
ggggagagggtcttgctttgcttaaaacgtgctttaagaattgcaaatgccgctcaacaa
atggcgaatgcaactcgaggcagtggcggatctgtcgcgctgttcattgaaatactgaac
aagtatctctatttttttgagaagggggtcacacagatcacagttgcttctgtacagagc
ttgattgaattgatcacaaatgaaatgcaaggtgagaatgcaacaccagatccaactgcg
gatgctttctttgcgagcacactacgcttcatccagttccagaaggataaaggtggtgca
gtgggtgaaaaatacgaggcaattaaggtttga
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