Coffea arabica (coffee): 140013405
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Entry
140013405 CDS
T11342
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140013405
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
140013405
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF7016
Motif
Other DBs
NCBI-GeneID:
140013405
NCBI-ProteinID:
XP_071918781
UniProt:
A0ABM4VGX2
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Position
1e:51892159..51896845
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AA seq
441 aa
AA seq
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MSVSLKYFSLCSLLTIMLVSLNAGAETESYVEDGKVLQSTGNSTIPLRPNEEAEFKHEHA
VVDPEMVASMVDMSIRNNTERRKLGFFSCGTGNPLDDCWRCDPNWQRHRKRLADCAIGFG
RNAIGGRDGRFYIVTDPGDDDPVNPQPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNS
FKTIDGRGLNVHIANGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTMADG
DGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDGYVRD
KNMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAEPTINSQGNRYLA
PANPFAKEVTKRVLTNEGVWQHWNWRSDGDLMLNGAYFTSSGLGASAGYARASSLAAKSS
SLVGSLTSGAGVLSCRRGHQC
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtctctcttaaatatttcagtctttgttcattgttaaccataatgctcgtatct
ctaaatgcgggtgcagaaacagaaagttacgttgaggacggcaaggtgttgcagagcaca
ggaaactcaacaatcccattaaggccaaatgaagaggctgaattcaagcacgagcacgct
gtcgtcgatccagaaatggtcgcttccatggttgatatgagcatacgcaataacacagag
aggaggaaattgggattcttctcatgcgggacaggaaatcctcttgatgattgctggcgc
tgtgacccaaactggcaacgccaccgcaaacgcctggccgattgtgccattggatttggg
cgcaatgccattggcggtcgtgatggcaggttctatatagtcacggaccctggtgatgat
gaccctgttaacccccagcctggaacacttcgtcatgccgtaattcaggacaggcctctc
tggattgtgttcaaacgggacatggtgatcaccctaaagcaagagcttattatgaacagc
tttaagacaattgatggccggggtcttaatgttcacattgcaaacggggcttgcataacc
atccaattcatcaccaatgtcatcattcacggcctccacatacatgactgcaaacaaact
ggtaatgccatggttcgaagctccccaagtcactatggctggaggacaatggctgatggt
gatggcatttccatatttggttcgagccacatttggattgatcataattctctttccaac
tgtgctgatggcctcattgatgccatcatgggctctactgcaattaccatctctaataac
tacttcactcaccataatgaggttatgttattgggccacagcgacggctacgttagggat
aagaatatgcaggtcaccattgcctacaaccattttggggaggggctgatacagaggatg
ccaaggtgtaggcatggatatttccatgtggtaaataatgactacactcattggaagatg
tatgcgattggtggcagtgctgagccaaccattaacagccaggggaacagatatctggcc
cctgccaacccctttgctaaagaggtgacaaagagagtgttgacaaatgaaggggtttgg
cagcactggaactggaggtctgatggggacctaatgctgaacggagcctacttcacttca
tctggccttggagcttcggccggctatgccagagcctccagcttagcagccaagtcctct
tcattagtgggatcccttacctctggtgctggggtcctttcttgccgcagagggcaccaa
tgctaa
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