Coffea arabica (coffee): 140014300
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Entry
140014300 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
carb03000
]
140014300
03036 Chromosome and associated proteins [BR:
carb03036
]
140014300
Transcription factors [BR:
carb03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
140014300
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
140014300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140014300
NCBI-ProteinID:
XP_071920986
LinkDB
All DBs
Position
9c:40575745..40599695
Genome browser
AA seq
1522 aa
AA seq
DB search
MDEEKENRDEEQAEEIEEVSASSDSFIDDADDMNDDVSHPEQQPLTEQEIEDLLNELIEV
ESKAAEAQEALEEESLAKVEAEVREELRQALAGDELENVAAEEMEIFKEDWENVLDELEK
ESANLLEQLDGAGIELPSLYKWIESQVPLGCCTEAWKTRTHWVGSQGTSDAKDSVAAAEK
YLQIHRPVRRRHGKTLEEGASGFLGKKLAITAGSEVARDNMGTDWDKFAELCSDKSNLDG
ISFGSKEWASVYLASTPQQAAELGLNFPGVDERRGWGLILGFLLRLLHLTIPLGDFEYHQ
FGVEEISDVEDNSIDPFIADAIANEGDLSLTEEQKRNFRKVKDEDDAKVSRKLQSHLKRK
RNIRRCKEEVLGKEVFAENGSLGCPVPSNLCSNHSLKKSSLENGYSPDGNLDDAFQMHET
SSNVDVENLKSNADSVMVAQLRPCILVNSQDLNCSDDCDGLGCHNPNMDGSPPPRCYASR
MVDICDLTNNGDKMTSSNFPLERQNKHFRCTACDKVSWEAHLHPLLKVSICLDCKNLMES
KIQEDLDCSECYCGWCGQNSDLKSCRSCKNFFCAGCIKRNLGEKILLQVQKTGWQCCCCI
PSMLQDLTLQLEKVVESDGLTDSSSDTDSDDSDANIDIVIGTKRRQQKKIRRILDDAELG
EETKRKIAIEKERQERLKSLGAQISKRSSILKSTSCNWNSPERRTVEVLDDPLRGYIVNN
VRDEGEDPIWIPPSISVKLKPHQLEGVRFMWENIIQSVKKVKSGDKGLGCILAHTMGLGK
TFQVIAFLYAAMRSVDLGLRCVLIVTPVSVLHNWRIEFNKWQPSEVKPLRIYMLEDVPRE
RRAELLAKWRRKGGVFLIGYSAFRNLSLGKHIKDRHIARDICCALQDGPDILVCDEAHMI
KNTRADVTQALKLVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI
ENGQHTNSTAEDVKIMNQRSHILYKQLKGFVQRMDMNVVKDDLPPKTVFVIAVKLSSLQK
KLYKRFLDVHGFTKDKVLGEKMRKRCFFVGYQALAQIWNHPGVLQLMKEDKDSVRHEDVV
ENFGGDDSSSDENVDYNLIAGEKLGRNDNGYLHQDWWRDLLQENTYKEVDYGGKMVLLLD
VLTLCSNMGDKALVFSQSLSTLDLIEFYLSKLPRPGKLGKCWKRGKDWYRLDGRTAGSER
QKMVERFNEPSNRRVKCILISTRAGSLGINLHAANRVIIVDGSWNPTYDLQAIFRVWRYG
QTKPVFAYRLLGHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFDFGDDEN
PDPLHELGQEKIDAADSHVSSNIGAVLKQKIPLTSGSTSSDKLMQTLIARHQPRWIAHYH
EHETLLQENEEEKLSKEEQEMAWEVYRRTFEWEEVQRVSPDASRFDQPEKNNKFAHEQQT
VPLEETSFDEKPARRNTVPSAPEINLESTTSRARNRMITRKCTNLSHLLTLRSQGTKMGC
STVCGECAREISWEELSKTSGK
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaaaaggaaaaccgcgacgaagaacaggcggaagaaattgaggaggtttcg
gcttcttctgattcattcatcgatgatgccgatgacatgaacgatgacgtttcacatcct
gagcagcaacccctgactgagcaagaaatcgaagaccttctcaatgagcttatagaagtt
gagagcaaggctgcggaggcacaagaagcgctagaggaagagtcgttggcaaaagtggaa
gctgaagttagagaagaattgcggcaagctctcgccggagatgaattggagaatgtggcg
gcagaagaaatggagatttttaaggaagactgggaaaatgttcttgatgagcttgagaag
gagagtgctaacttattggaacaacttgatggtgctggtattgaactccctagtctgtat
aaatggattgagagtcaggttccccttggttgctgtactgaagcatggaaaacaaggact
cactgggttggatctcagggtaccagcgatgctaaggattcagttgcggctgctgaaaag
tatctccaaatccacagacctgtaagaagacgacatggtaaaactttggaggagggtgcc
agcggttttctggggaaaaaacttgctattactgctggttctgaagtcgccagagataac
atgggcacggattgggacaaatttgctgaactttgctcggacaagtcaaatttggatggc
atatcatttggcagcaaggaatgggcttctgtttacttggccagcactcctcagcaggct
gctgaattgggccttaattttcctggagttgatgagaggagagggtgggggttgatctta
ggctttctactgagactccttcatctgaccatcccccttggagattttgaatatcatcaa
tttggggtggaggagatcagtgacgtcgaggacaattcaattgatccatttattgcagat
gccattgctaatgaaggagatttaagtctcactgaagaacaaaagagaaattttaggaag
gttaaagacgaagatgatgcaaaggttagcaggaagcttcagagtcatttgaaacggaaa
agaaacattagaagatgtaaggaggaggttctagggaaagaagttttcgcagaaaatgga
agtttaggttgtccagttccttcaaatctgtgctctaaccattctttgaagaaaagttct
cttgagaatggctattcccctgatggtaatcttgacgatgcctttcaaatgcatgaaaca
tcaagcaatgtggatgttgagaacctaaaatctaatgcggattcagtgatggttgctcag
ttgcgtccatgtattttagtaaactctcaggacttgaactgttcagatgactgtgatgga
ttaggttgtcataatcctaacatggatggatctcctcctccaagatgctatgcaagcagg
atggtggatatatgtgacttgacaaacaatggagataagatgacttcctctaatttccct
cttgagagacagaacaaacattttcgatgcacagcttgtgataaagtttcttgggaagca
cacttacatcctcttttgaaagtatctatatgtttggactgcaaaaacttaatggaatca
aagatacaggaggatcttgactgctctgagtgctattgtggatggtgtggccagaacagt
gacttaaaaagttgtagatcgtgcaaaaattttttctgtgctggctgtataaaacggaac
cttggagaaaagattttgttacaagtccagaagaccggttggcagtgttgctgctgcatt
ccaagtatgctacaggatttaaccttacaattggaaaaggttgttgaatctgatggtctg
acagattctagttcagacactgattcagatgattctgatgccaatattgacatagttatt
ggcactaagagaagacaacaaaagaagattcggagaattcttgatgatgctgagctggga
gaagagactaaaaggaaaattgcaattgaaaaggaacgccaagaacgccttaagtcattg
ggggcacaaatctcgaagagatcttccatcttaaaatctacaagctgtaattggaactca
ccagagcgcaggacagttgaagtgttagatgatcctttaaggggctacatagttaataat
gtaagagatgaaggtgaggatcccatatggattcctcccagcatctcagtaaaattgaaa
ccgcaccagcttgagggagttcgttttatgtgggagaacatcattcaatcagtaaaaaaa
gtaaaatcaggtgataagggccttggttgcatactagctcataccatgggtttaggcaaa
actttccaggttattgctttcttatatgctgcaatgcgaagtgtggatttgggtttgaga
tgtgtgctcattgtgacacctgttagtgtcctgcataattggcggattgagtttaacaaa
tggcaaccatctgaagtgaagcctctccgaatctacatgctggaagatgttccaagggaa
cgaagagctgagttgcttgctaaatggagacgaaaaggtggtgtcttcttgattggctac
tctgcttttagaaatttgtctcttgggaagcatatcaaagatcgccatatagcaagggat
atttgttgtgccctccaggatggaccagatatacttgtttgtgatgaggctcacatgatc
aagaacaccagggctgatgtgactcaagccttgaagctagtcaaatgccaaagaaggatt
gcattgactggatcacctcttcagaacaatttaatggagtactactgtatggttgatttt
gtaagagaaggatttcttggtagcagccatgagttcagaaatcgcttccaaaatcccata
gaaaatggccaacataccaattctacagctgaagatgtgaagattatgaatcaaagatct
catattctgtataaacaactaaagggatttgttcagagaatggacatgaatgttgttaaa
gatgatttaccccccaaaactgttttcgtaatagccgtgaagctctcttctttacagaaa
aagttgtacaaaagatttcttgatgtgcatggtttcacaaaagacaaggttcttggtgaa
aagatgaggaaacggtgcttttttgttgggtaccaggccttggctcagatatggaaccat
cctggagttttgcaattaatgaaagaagacaaagactctgttagacatgaggatgttgtt
gagaattttggaggcgatgacagctcatctgatgagaacgtagattataatttgattgct
ggagaaaagctgggcagaaatgataatggctatcttcatcaggattggtggagagatctc
cttcaggagaatacctataaggaggttgactatggtgggaaaatggtcctgctacttgat
gttctgacgttgtgctctaatatgggagacaaggcattggtgtttagtcagagcttgtca
actttggatctaattgagttttatctttcgaaattacctcgtccagggaaacttgggaaa
tgttggaaacgaggaaaagactggtacaggctagatggaagaacggcgggctctgaaagg
cagaaaatggtggagaggtttaatgagccgtcgaacagaagggttaagtgcattttgata
tcaactagagctggatcgttgggtatcaatcttcatgctgctaatcgtgtaattatagtt
gatggctcatggaatccaacctatgatcttcaggctatatttcgggtttggaggtatggg
cagacgaagccagtctttgcttatcgattgctgggtcatggaacaatggaggagaaaatc
tacaagcgtcaggtgaccaaggaaggacttgctgcaagggtggttgaccggcagcaagta
catagaactatatcaaaggaggaaatgttgcatctttttgactttggtgatgatgaaaac
cctgatccgctgcatgagttaggacaagagaaaatagatgcagctgattctcatgtaagc
agtaatattggagcagttttaaagcagaaaattcctttaacttctggaagcacatcctca
gataaattgatgcagaccttgattgccaggcatcaaccaagatggattgcacattatcat
gaacatgaaactctcttgcaagagaatgaagaggaaaagctgtcaaaagaggaacaagag
atggcttgggaagtatacaggagaacttttgaatgggaggaagtgcaacgagtttcacct
gatgcatctagatttgatcagccagagaagaataacaaatttgcacatgagcagcagaca
gtacctctcgaggaaacttcatttgatgaaaaaccagctcgcagaaacacagttccctct
gctcctgaaatcaatcttgaatccacaacttcacgcgcaagaaaccggatgattacgaga
aaatgtacaaatctctcccatctgctgacacttcgaagtcagggcacaaaaatgggttgc
agcactgtctgtggagaatgcgcacgggaaattagttgggaggagctcagcaagacatca
ggaaagtga
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