Coffea arabica (coffee): 140014935
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Entry
140014935 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140014935
09122 Translation
03013 Nucleocytoplasmic transport
140014935
03015 mRNA surveillance pathway
140014935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140014935
03041 Spliceosome [BR:
carb03041
]
140014935
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140014935
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
140014935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
GREB1_2nd
Motif
Other DBs
NCBI-GeneID:
140014935
NCBI-ProteinID:
XP_071922723
UniProt:
A0ABM4VT60
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Position
10e
Genome browser
AA seq
829 aa
AA seq
DB search
MSTQYPVLYDRPINKWKVAELKEELKRRNLMTKGLKDDLVRRLDEAIRNERASFGTETYK
DFEPSNNEPNIPILQPHSGQISGFAENKYVNEVKVDNFVSGIPIVDETSEADQAKATGGS
ISVPAYVESDVLCNAVDTSNNKDELVSTPIGISECPERVIGNSGPAKGNEILTSARKDDL
DNEGILEASGKSSGILTEVVDTHTASISTNTKNESAESGNEELEVVPIAGSTIAPISTST
KNESAEAGNEDLEVVPIADSEQNSHNVGLKLENDSLKPSQMDAESLVSYSSNQVHEISPN
LGFQVQCESIKTDSLSNYEKNEIKENLNANNIQLEPEVVRQEMVQPSSSKDPSGGSFYSL
DDQVPDVKPGSVVEADDDKCSVKNIEKIDNSGEGSAMDHILENRTKDELADDNKFTEEPS
SEKKELDDVFGANLPTQNMESSYEEKFEIAASAEQRESQDDQSSDAKFIEMTDMTDGEPL
EKINLDQSSADDSMEDDSLEARQADSDSDPKKVGDKTKPNEETVAKSAGDIEAPQADIPS
HTLKSSHANSDQMAESAEKRKFEAVEAAPDNKEPRKRQRRWNNESVKIPQAQIPDTSLSA
TSKTVVQSATTPFVDGSNSATGRDATNERIVPPSAITPTNSLCIDHFVRPFTLKAVQELL
SKTGTICNFWMDHIKTHCYVTYASTEEAMETRNAVYNLQWPPYGGRLLVAEFVDPEEVKL
RVEAPSQSAAPVNSTSVMPSQPPSKQLAPTPVNQQDVRQQPHRSEQQTTSDPPTTRERLA
RPRSPVAATVDPPIVTLDDLFRKTKTTPRIYYLPLTDEQVAVKLSRRRK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacaatatccggttctgtatgatcgaccaatcaataagtggaaggtggctgaa
ctgaaggaagagcttaagagacgtaacttgatgacaaaaggcttgaaggatgacctggta
agacgattggatgaagcaattcggaatgaaagggcaagttttgggacagaaacgtacaag
gattttgaacccagcaataatgagcctaatattccaatactgcaacctcattccgggcaa
atttctgggtttgctgagaataaatatgtgaatgaagttaaagtagacaactttgtcagt
gggattccgattgttgatgaaactagtgaagcagatcaagcaaaagctactggtggttct
atttctgttccagcatatgtggaatcagacgttttgtgtaatgctgttgataccagtaac
aataaagatgagctagtgtcaacaccaattggtatcagtgaatgtcctgaaagagtaatt
ggaaacagcggacctgccaagggaaatgagattttgacatctgcacgtaaggatgatctg
gacaatgaaggaatcttagaggcatctggcaaaagcagcggtattttgactgaagttgtt
gatacccacactgcatctattagtacaaatacaaaaaatgagtctgcagagtcaggcaat
gaggagcttgaggtagtaccaattgcaggtagtaccattgcacctattagtacaagtaca
aaaaatgaatctgcagaggcaggcaacgaggatcttgaggtagtaccaattgcagatagt
gaacaaaactcacataacgttggtcttaagttggagaatgattctttaaagccttcgcag
atggatgccgagtctcttgtctcctactcaagcaaccaggtacatgagattagcccaaat
ttagggtttcaagtacagtgtgagtcaattaaaactgatagtttatctaattatgaaaaa
aatgaaataaaggaaaacttaaatgctaataatattcaattagaaccagaagttgttagg
caagagatggtacaaccatcatccagcaaagacccttcaggtggcagcttttattcactg
gatgatcaagtgccagatgtgaaaccaggttctgttgttgaagctgatgatgataaatgt
agtgtgaaaaatattgagaaaattgataattcaggtgagggttctgcaatggaccatatc
ctggagaataggaccaaagatgaactagcagatgataataagttcactgaagagccctct
agtgaaaaaaaagaattggatgatgttttcggggctaatttgcctacacagaatatggaa
tcatcttatgaggagaaatttgagattgctgcttctgctgagcaaagagagtcgcaagac
gaccaatcctcagatgcaaaatttattgagatgactgacatgacagatggagaaccactt
gaaaagataaatctagatcagtcttcagctgatgattccatggaagatgatagcttggag
gcaagacaagccgactccgattctgatcctaagaaagtaggtgacaagaccaagccaaat
gaagaaactgttgcaaaatctgctggtgacattgaagctccacaagctgatattccttct
cataccctgaagtcatcacatgcaaatagtgatcaaatggctgaatcggctgagaaaaga
aaatttgaagcagttgaagctgcaccagataataaggaacctcggaagaggcagaggaga
tggaataatgaaagtgtgaaaattcctcaagcacaaatcccagatacttcactttctgca
acatcaaagactgtggttcagagtgcaacaactccttttgttgatggatctaactctgca
actggtagagatgccaccaatgaacgtattgtgcctccatcggcgataacacctactaac
tccctctgcattgatcactttgttcgcccttttactctgaaagctgtgcaagagctcctc
tccaaaacgggtacaatttgcaatttttggatggatcatatcaagacccattgctatgtg
acgtatgcttctactgaggaagccatggagacgcggaatgctgtttacaatcttcaatgg
cctccatatgggggacgacttctggttgcagagtttgttgatcctgaggaagtaaaattg
cgggtagaggctccttcacaatctgcagcacctgtaaactcgacatcagtgatgccatcg
caacctccctctaagcaattggctccaacacctgtaaaccaacaggatgtaaggcagcaa
ccccatcgctcagagcaacagaccacttctgatccacccacaacaagggaacgcttggct
cggcctcgttctccggttgctgcgacagttgatccaccaatagtcactttggatgaccta
ttcaggaagaccaaaaccactccacgcatctattatttaccattaactgatgaacaagtt
gccgtaaaactcagcagacgcagaaagtga
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