Coffea arabica (coffee): 140035213
Help
Entry
140035213 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140035213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140035213
03041 Spliceosome [BR:
carb03041
]
140035213
03009 Ribosome biogenesis [BR:
carb03009
]
140035213
03016 Transfer RNA biogenesis [BR:
carb03016
]
140035213
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140035213
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140035213
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140035213
Complex C
U4/U6.U5 tri-SnRNP related factors
140035213
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
140035213
Transfer RNA biogenesis [BR:
carb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140035213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
nSTAND3
Motif
Other DBs
NCBI-GeneID:
140035213
NCBI-ProteinID:
XP_071931323
UniProt:
A0ABM4WHR6
LinkDB
All DBs
Position
2c:21282500..21290301
Genome browser
AA seq
995 aa
AA seq
DB search
MGSVKRKSIENPIEGYDTPAEKQQKRGNELLNLDEPVACVHDVSYPEGYVPRASTSNLPD
KDAKPAKEFPFTLDPFQAEAIKCLKNGESVLVSAHTSAGKTVVALYAIAMSLQNKQRVIY
TSPIKALSNQKYREFKEELSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVA
WVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYFFPSGGNGLYLVVDEKGKFRENSFQKALNALVPPGEGDKKRENGKWQK
GLFVGKAGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNEDEKVNIE
TIFWSAMDMLSEDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKLMVKGSADSLNSAFHLSYNMLLNQIRSEDGDPVNLLRNSFYQFQVDRAIPDL
VKQAKSLEEERDSIILEEEDSLENYYSLLQQFKSLKKDVRDIVLSPKYCLPFLQPGRLVS
IQLIKVDDNLPSFSVKDDVTLGVIINFERIKGLSEDDTNKKPEDASYTVDILTRCAVHKD
EAGKRTISIVPLKDPGEPAVVSLPISQIDSLSSVRLVIPKDLLPVEARENTLKKVSEVLS
RFAKDGLPQLDPEDDMKVQSSSYRKAVRRIEALENLFEKHEIAKSPLIEQKLKLLHTKKQ
LTAKIKSIKRTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSADELT
LTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAQKPRDELELLFTQLQDTARRVAKVQL
ECKVQIDVENFVSSFRPDIMEAVFAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQL
IQAAKSIGETELEAKFEDAVIKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgggatcggtaaaaaggaagtcaattgaaaaccctatcgagggatatgatacgcctgct
gagaagcagcagaagagaggtaatgaacttttgaatttggacgaaccagttgcctgtgtc
cacgatgtatcttaccctgaaggctatgtccctcgtgcttcgacctccaatttgcctgat
aaagatgcaaaacccgccaaggaattcccttttactctcgacccttttcaggcggaagca
attaagtgtctgaagaatggggaatctgttttggtatctgcgcatacatcagctggtaag
actgtggtggcattgtacgccattgccatgtcattgcagaataagcaacgggtgatatat
acttcaccaattaaggcactcagtaatcagaagtatagagagtttaaagaggagctttcg
gatgttggtttgatgacaggggatgtcactattgatcctaatgcttcttgcttggtaatg
acaacagaaatttggcgtagcatgcagtacaagggatctgaggttacgagggaggtggca
tgggttatctttgatgaggtgcattacatgcgtgacagagaaagaggtgttgtatgggaa
gagagtattgttatggctccaaagaattctcgttttgtatttctctctgccactgtccct
aatgctaaggagtttgcagattgggttgcaaaggtccatcagcaaccatgtcatatcgtt
tatactgattatagaccaacaccacttcagcattacttcttcccttctggaggcaatggt
ctttacctagtggttgacgaaaaaggaaaatttcgtgagaatagttttcagaaagctcta
aatgctcttgttcctcctggtgaaggggataagaaaagggagaatggaaaatggcagaag
ggactttttgttggtaaagcaggcgaagacagtgacatatttaagatggtaaaaatgatt
attcagcgccaatatgatcctgtcatatgttttagcttcagcaaaagagaatgtgaattt
cttgcaatgcagatggctaaaatggatcttaacaatgaggatgagaaggtgaacattgaa
acgatattctggagtgcgatggatatgttgtcagaggatgataaaaagctgccacaggtc
tccaatatgctgcctctgttaaaacgtggaattggcgtgcaccattctggcttgcttccc
atactaaaggaagtgatagaaattctattccaagaaggcttaatcaagtgtttatttgcc
acagaaaccttcagtataggactgaatatgcctgcaaaaacggtcgtttttacaaatgtt
cgcaagtttgatggagataagtttagatggatatccagtggagagtatattcagatgagt
ggtcgtgctggtcgtagggggattgatgagcgaggaatttgcattcttatggttgatgag
aagctggaaccttctacagctaagttaatggtaaaaggaagtgctgatagtttgaacagt
gccttccacttgagctacaatatgcttctgaatcagatacggtctgaagatggtgatcct
gtgaatttgcttcgcaattccttctatcaattccaagtggatcgagccattcccgatctt
gtgaaacaagcaaaaagtcttgaagaagagagggattcaatcatactcgaggaagaagat
agcttggagaattactactctctactacagcaatttaagagtttaaaaaaggatgtgcgt
gatattgtcctctctccaaagtattgtttacccttcctgcagcctggcaggcttgtaagc
atccagctcataaaggttgatgataatttgccatcattttccgtcaaggatgatgtcaca
ttgggggtcattatcaattttgaaaggataaaaggtctttctgaagatgatacaaataaa
aagcctgaggatgcaagttatacagtggatattcttacaagatgtgcagtccataaggat
gaagctggtaaaagaacaatttcgattgtaccattgaaagatcctggggaacctgccgtt
gtttctcttcctatatctcagattgatagtttgagtagtgttcgacttgtaatacccaag
gatcttttgccagtggaagctcgggaaaataccctgaaaaaggtgtctgaagttctatct
agatttgctaaagacggactgcctcaattagacccagaagatgacatgaaggttcagagt
agctcatacagaaaagctgtacgaagaatagaggcccttgagaacctgtttgaaaaacat
gaaattgcaaaatctccacttattgagcaaaagctcaaacttttgcatacgaagaagcag
cttactgccaaaattaaatcaatcaagagaacaatgcgttcctcgacagccttggctttc
aaagatgaacttaaagcaagaaaaagagtgcttcggagactagggtacgtcacaagtgat
gatgttgtcgagttaaaggggaaagttgcttgtgaaataagtagtgcagatgagttgacc
ctgacagaactcatgtttaatggggttctaaaggacataaaggtagaagagatggtgtct
ctgttgtcttgttttgtttggcaagagaaacttcaggatgctcaaaagcctagggatgag
cttgagttgctttttacacaattacaagatacagctcggagagttgccaaggtccagctt
gaatgcaaggttcaaattgatgttgagaattttgtaagttcattccgtcctgatattatg
gaggccgtctttgcttgggccaaaggatcgaaattttatgagataatggaaatcactcag
gtttttgagggcagcttaattagggctatcaggaggctggaagaggttcttcagcaacta
atacaagcagcaaaatccattggagaaactgagcttgaagcaaagtttgaagatgcagtt
attaagataaagagggatattgtttttgcagcatctctctatctgtag
DBGET
integrated database retrieval system
