Coffea arabica (coffee): 140036532
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Entry
140036532 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carb03009
]
140036532
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140036532
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
140036532
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
140036532
NCBI-ProteinID:
XP_071934454
UniProt:
A0ABM4WRQ3
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Position
2e:5051235..5056833
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AA seq
591 aa
AA seq
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MASAQGSNPNRALTDTRFSDLKPPLSQAVLDALTKSGFDFCTPVQAATIPLLCSYKDVAV
DAATGSGKTLAFLVPLVEILRRSSSPKPHQVLGLIISPTRELSSQIYHVAQPFISTLSNV
KSVLLVGGVEVKSDVRKLEEEGANLLIGTPGRLFDIMERMDLLDFRNLEILILDEADRLL
DMGFQKQINAIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVQAEMKILDNPTF
SQQQAPSKTPSGLHIEYLECEADKKPSQLVQLLAQNMSKKIIIYFMTCACVDYWGVVLPQ
ISALKRLSIISLHGKMKQTAREKALASFTSLASGILLCTDVAARGLDIPGVDCIVQYDPP
QDPNVFIHRVGRTARLGRQGNAIVFLLPKEEAYVEFLRLRRVPLEERKSPDDVCDIVPQI
RSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLGMGYGLLQLPAMPDLK
HHNLSTEGFTPLEDISIDEIKYKDKSREKQRKKNLQAKKAAEPQQKVQKPKAASTTTATL
MRKKTARQRRAVQSVEDDDEMAQEYRLLKKLKRGTINESEYAKLTGTEDLL
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgcccaaggttccaacccaaacagagccttaaccgacactcggttctccgac
ctcaaacccccactctcccaggccgttcttgatgcccttactaaatccggttttgatttc
tgtacgccggttcaggccgccactatacccttgctctgcagctacaaagacgttgccgtg
gacgccgccaccggttccggcaaaacccttgcattcctcgttcctctcgtcgagattctc
cgccgctcctcttcccccaaacctcatcaggtacttggtctaatcatatcacctacgagg
gaattgtcatcgcaaatataccatgttgcacagccattcatctccacgttgtcaaatgta
aagtctgtgcttcttgtcggaggggtagaagtaaaatcggacgtgaggaaattagaagaa
gagggtgcaaatttattgattggcactcctggcaggctctttgacataatggagcgtatg
gacttgttggattttcggaaccttgagattctcattttggatgaggctgacaggctgttg
gatatgggattccagaagcagataaatgccatcatatcacgcttaccaaagcttcgtaga
actggtcttttttcagctactcaaactgaagctgttgaagagctttccaaggcaggatta
agaaatcctgtgagggttgaggttcaagcagaaatgaaaattctagataatccaacattc
tcccaacaacaggcaccatcaaaaacaccttctggccttcacattgagtatctggagtgc
gaagcagataagaaaccatcgcagcttgttcaacttcttgctcagaacatgtctaagaag
attataatttattttatgacctgtgcttgtgtggattactggggagttgttcttcctcaa
atatctgctctaaagcgtttatctataatctcacttcatggaaagatgaagcagactgca
agggaaaaagcattggcttcattcacatctctggcaagtggcatccttctatgcaccgat
gtagctgcacgtggtcttgacattcctggagttgattgcatagtacagtatgacccccct
caggatccaaatgtgtttatacatagagtaggacgaacagctaggttgggacggcaagga
aatgctattgtgtttttgttaccaaaggaggaagcatatgttgagttccttcgattaagg
agggttccacttgaagagagaaaaagcccagatgatgtttgtgatattgtcccacagata
agatcagctgcaaaaaaggatcgtgatgtcatggaaaaagggcttagagcttttgtttcc
tacatccgtgcatacaaagagcatcactgctcctatatattcaggtggaaagaacttgag
attgggaaattgggcatgggttatggcttattgcagctccctgcaatgcctgacctgaag
catcacaatctttctactgagggttttacaccacttgaagatataagcattgatgagatc
aagtacaaggataaatctcgtgagaaacaaagaaagaagaatttgcaggcaaaaaaagca
gctgaaccacaacagaaggtacagaagccaaaagcagcctcaaccactacagccacttta
atgaggaagaaaacggccaggcaaagacgggctgttcaatcagttgaggatgatgacgag
atggcacaggaataccgcttattgaaaaagctaaaaaggggtactataaatgaaagtgaa
tatgcgaaattgactggaactgaagatttgctttga
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