Coffea arabica (coffee): 140036555
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Entry
140036555 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
140036555
Membrane trafficking [BR:
carb04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
140036555
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
140036555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_THOC3
WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_HPS5
Synaptobrevin
WDR55
Beta-prop_WDR5
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
KNTC1_N
NBCH_WD40
Beta-prop_WDR75_2nd
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
140036555
NCBI-ProteinID:
XP_071934495
UniProt:
A0ABM4WRT6
LinkDB
All DBs
Position
2e:5368339..5383139
Genome browser
AA seq
1103 aa
AA seq
DB search
MFGKLFQKTSPRPPPQQSEVQESPISSDVAPLVVVHYGIPSTASVLAFDSVQQLLAVGTL
DGRIKVVGGDSIEGLLMSPKPIPFKNLEFLQNQGYLVSVSNENEVQVWDLESRSISTSLQ
WESNITAFSVIYGTQFMYIGDEYGFLSVLKYDAEEQTILQLPYHIPANLVAEAAEISLPF
NQSIVGVLPQPSSFGNRLVLAYEDGLIVLWDVTEDRAVLVRGNKDLQLKDEILAESSSDG
SHEPLDNLVDHEKEISSLCWVSADGSLLAVGYVDGDIFLWNLSASDHIKGHGAQKSSDKV
VKIQLSSAERRLPVIVLHWSANKKRNGFGGQLFVYGGEEIGSEEVLTILDLDWSSGIAKL
TCVDRVDLPLNGSFSDMIVIARSHEMEKTDSASLLVLTNPGQLHFYDNSCLSTLRFEPDK
KHSVLAVEYPATIPTIEPIMTVGKLYSVVAKANSSRVLAETVSAAKLEVEQTMTRGSSRW
PLTGGVPGELSIAEDGGMERIYVAGYQDGSVRVWDSTFPVLSLRLVFLLQVEGIDVAGAS
ASISTLDFSPTSLSLAIGNEYGLVWLYGLDGTKDKSGIHLVTQTERQVLNLPHDGGSLCK
AIFSLLNSPVRTLKWVNSGDRLAVGFECGQVAMVETSALSVLFLTDALCGSSPIISLAVK
TLPDTESLKQSEIGTSNESVKEVAFILTRDSHVVLVDSSTGNMISQPIHPMEESTAVSLY
IIEGDASVAEGSENDISKSSEDFEAKGQRGQKSYERQSDPMEAENSEPDIVHNLKNSIIV
FCCENALHLYFLNSVIQGENKSIYKLDLVKPCSWTAIFTKEATEYGLIIVYQTGDIEVRS
LPAFSVLGSTSLTSILRWNFKTNMNNLMSSSDKGQITLACGSEFAIVSLLASENDFRIPE
ALPCLHDEVLAAAADATISIALDQKNKQSTVPGVFGGFMKGFKGAKMEMNNSEARESILA
HMDIIFSRFPFSEPVKNLADDQPHVELNIDDLEIDEPLSVVSSSSKSDNERKDKETERQR
LFEGSSTDTKPRMRTREEIIAKYRKAGDATSAAAQARDKLIERQQKLEKLSERTAELQSG
AESFADLANELARNMEKRKWWNF
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgttcggtaaattattccaaaagaccagccctcgtccaccgcctcagcaaagtgaagtg
caagaaagccctatatcctcggatgtggcaccccttgttgtagttcattatggtatccca
tctactgcttcagtcctggcttttgactccgttcagcaactactagctgttggaaccttg
gatggaaggattaaagtggttggtggtgacagcattgaaggccttcttatgtctcctaag
ccgataccttttaagaacttggagtttcttcaaaatcaaggctatcttgtgagtgtctcc
aatgaaaatgaagttcaggtttgggatctagaaagcaggagtatctctacaagtttacaa
tgggaatccaatataactgccttctctgttatttatggcactcaattcatgtatataggg
gacgaatatggatttttgtctgtgctgaagtatgatgctgaggaacaaaccattcttcaa
ttaccctaccatattcctgctaatcttgtagctgaagcagcagagatttccttgccattc
aaccaatcgatagtgggtgtgctacctcagccttcatcatttggaaataggcttgttctt
gcatatgaggatgggttgatagttctctgggatgttactgaagatagagctgttcttgtt
agaggaaataaggatctccaactaaaggatgaaatactggctgaatcttcgagtgatggg
agccatgagcccttggataatttagtagaccatgaaaaggaaataagctctctttgttgg
gtgtctgctgatggttcattgctagctgttggctatgtggatggagacattttcctgtgg
aatctgtctgcttctgatcatattaaaggtcacggagctcaaaagtcatctgataaagtg
gttaagatacaattgtcatctgcagaaagaaggcttcctgtcattgttctgcactggtct
gctaacaagaaacgaaatggttttggaggtcagctttttgtttatggcggtgaagaaatt
ggatctgaagaagtcttgacgattctcgatcttgactggtcatctgggatagcaaagtta
acatgcgtcgaccgtgttgatcttccccttaatgggtctttctcggatatgattgtcatt
gcaagatctcatgaaatggagaaaactgacagtgcttcactgctggttctgaccaaccca
ggtcaactccatttttatgataactcttgtttgtccacgctgaggtttgagccagataag
aagcattcagtccttgctgtagaatatcctgcaactatacctacaattgaaccaataatg
actgtgggaaaactatattcagtggttgcaaaggccaattcttccagggttcttgcagag
acggtttcagctgcaaaacttgaagttgagcagactatgacaagagggagtagcagatgg
cctttgactggtggtgttcctggtgaactgtctatagctgaagatggtggaatggaaaga
atatatgtagcaggctatcaagacggaagtgttcgagtatgggattcgacatttcctgtt
ctatcactcaggcttgtttttctactccaggtggagggtattgatgttgctggtgcaagt
gcatcaatctctactttagatttttctcccacttctttgtctttggctattggcaatgaa
tatggtcttgtttggttgtatggtctagatggaactaaagataaatctggaattcacttg
gttacacagacagaacggcaagttcttaatttgcctcatgacggtggatccctgtgcaag
gctattttctccctcctgaactctcctgttcgtaccttaaagtgggtaaattctggagat
agacttgcagttgggtttgaatgcggtcaggttgctatggttgaaaccagtgcgctgtca
gtattgtttcttactgacgctctatgcggctcaagcccaatcatctctctagctgtgaaa
acacttccagataccgagagtctgaagcagtcggaaattgggacatcaaatgaatctgtt
aaggaggtagcttttattttaactagagattcacatgttgtattggtggatagtagcact
ggcaatatgatatctcagccaattcatccaatggaagagtcaactgcagtttccttgtat
attatagagggtgatgcatctgtagctgaaggctctgaaaacgacatttcaaagtcttct
gaggattttgaagccaaaggtcaacgtggacaaaagagttatgaacgtcaaagtgatcca
atggaagctgaaaattcagagccagatatagtccataatttgaagaactcaataattgta
ttttgttgtgagaatgcattgcatctgtactttttgaactctgtgattcagggtgagaat
aagtcaatctataaacttgatcttgtcaaaccatgttcctggacagcaatattcacaaaa
gaggcaacagaatatgggcttatcatagtctatcagactggagatattgaagtcaggtcc
ttgccagctttcagtgtgttgggaagcacatcattaacatcaattcttaggtggaatttc
aagactaatatgaacaatttgatgagttcttcagataaagggcagattactttggcctgt
gggagtgaatttgctattgtatctctactagcctctgaaaacgacttcaggattccggag
gctttaccttgtcttcatgatgaagtccttgccgctgctgcagatgccaccatcagtatt
gccctcgatcagaagaacaagcagagtactgtccctggtgtttttggtggattcatgaag
gggtttaaaggggctaagatggagatgaataactccgaagctcgggaaagcattcttgca
catatggacatcatattttctaggtttcctttttcagaacctgtaaaaaatcttgccgat
gatcaacctcatgttgagcttaacatagatgaccttgaaattgatgagcctttgtcagtt
gtatcatcatcttctaagagtgacaatgaaagaaaagacaaggaaacagagaggcaaagg
ttgtttgaaggcagttctactgatacaaaacccagaatgagaacaagagaggaaatcatt
gcaaaatatcgaaaagctggggatgccacctctgcagctgcacaagcaagagacaaactt
atagaacggcagcagaaacttgagaaacttagtgaacgcactgcagaacttcaaagcggg
gctgagagctttgcagatttggcaaatgagctggctaggaacatggaaaagcggaaatgg
tggaacttttga
DBGET
integrated database retrieval system
