KEGG   Coffea arabica (coffee): 140037442
Entry
140037442         CDS       T11342                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
carb  Coffea arabica (coffee)
Pathway
carb03018  RNA degradation
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140037442
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140037442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    140037442
   03041 Spliceosome [BR:carb03041]
    140037442
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140037442
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     140037442
Spliceosome [BR:carb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    140037442
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 140037442
NCBI-ProteinID: XP_071937652
UniProt: A0ABM4VGV5
LinkDB
Position
1c
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggccaacaatccctcgcagcttctgccatcagagttgattgatcggtgcatcggctcc
aagatatgggtcataatgaagggagacaaggagctggttggtactctgaggggtttcgat
gtctacgtcaacatggtccttgaagacgtcactgaatatgaaattacttctgaagggcgc
cgaataacaaagctcgaccagattctgcttaatggaaacaacattgccattctggtccct
ggtggctccccagatcctgagtga

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