Coffea arabica (coffee): 140037442
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Entry
140037442 CDS
T11342
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140037442
09123 Folding, sorting and degradation
03018 RNA degradation
140037442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140037442
03041 Spliceosome [BR:
carb03041
]
140037442
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140037442
mRNA degradation factors
5'-3' decay
Lsm complex
140037442
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140037442
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
140037442
NCBI-ProteinID:
XP_071937652
UniProt:
A0ABM4VGV5
LinkDB
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Position
1c
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatccctcgcagcttctgccatcagagttgattgatcggtgcatcggctcc
aagatatgggtcataatgaagggagacaaggagctggttggtactctgaggggtttcgat
gtctacgtcaacatggtccttgaagacgtcactgaatatgaaattacttctgaagggcgc
cgaataacaaagctcgaccagattctgcttaatggaaacaacattgccattctggtccct
ggtggctccccagatcctgagtga
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