Coffea arabica (coffee): 140037607
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Entry
140037607 CDS
T11342
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140037607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
140037607
04121 Ubiquitin system [BR:
carb04121
]
140037607
03036 Chromosome and associated proteins [BR:
carb03036
]
140037607
03400 DNA repair and recombination proteins [BR:
carb03400
]
140037607
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
140037607
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
140037607
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
140037607
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
140037607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_5
zf-C3HC4_4
zf-RING_6
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
PTCB-BRCT
RTT107_BRCT_5
zf-RING_10
Prok-RING_4
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
140037607
NCBI-ProteinID:
XP_071938230
UniProt:
A0ABM4X2H2
LinkDB
All DBs
Position
1c:complement(57913575..57919460)
Genome browser
AA seq
687 aa
AA seq
DB search
MAEMQKLVKLLNPWALHHQKLGLELKCPLCLNLLNKPLLLPCTHIFCDICVPRSNQFGTE
CPACKNQCPDGDIRSAPYMENLVSIYRSLDATFANISLQILSSEQALPHVAPRIVDKLKK
ELSETPEGGVINSAITNKAAVLSDAHNKDVLQSCGKKGSDEVFETEEIDMNQVPQLSPES
PPSFGDVKDMDGNTSLPGSRCGTTEKCKTKIIMDSCMLDTPGGGIVDQGTIQKGTPYTRD
AKRQKMLDYGSSATVVMGNCLTQKVDSSSNGAISNCNLAVKPEEQPCIAQPTPVSNSSDL
ESVCAFCHSSKLTDGTGPILYYANRKEVYGEKSALSNVTPVHSKCIEWTPRIYFEGETIK
NLESELGRAAKLKCSSCGQKGAALGCFAKSCRRTYHIPCAFAIQECRWDCEDFLMLCPSH
NSFKFPREKSKSQKSSTGLKHNTMSNEMLFTNSEFWATLPSGRKEWVFCGSALSSEEKFI
LVKFATMCGATVSKLWESNVTHVIAATDKKGACTRTLKVLMGILNGKWILTMDWVKACTE
AKHPVNEEPYEVNLDNHGCLNGPKTGRLRVSNNEPKLFDGLKFYFSGDFVPAYKIDLLDL
VRTAGGTILESAEQLMVQSHEQTTFHECLVVYNSDATRACAIEEEISVISRRLEEAANAA
KETNSPVVRHTWILESIAACKLLPLPC
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatgcagaaattagtgaagttgttgaacccttgggctctccaccatcagaaa
ctgggtcttgagctcaaatgccctctttgcctaaatttgctgaataaaccattgttgttg
ccctgtactcacattttctgcgatatttgcgtccctagatctaaccaatttggaacagag
tgccctgcttgcaaaaatcagtgtcctgatggagatataagatcagccccttacatggag
aacttggttagcatctaccgaagtttggatgctacttttgctaatatcagccttcagatt
ctatcttctgagcaagcactgccacatgttgctccacgaattgttgataaattaaaaaaa
gagctgagtgaaacacctgagggtggagtaatcaacagtgcaataaccaataaagctgct
gtgttaagtgatgctcacaataaagacgtattgcagtcttgtggtaagaagggaagtgat
gaggtgtttgagactgaagaaatagatatgaatcaggtacctcaactttcaccggagagc
cctccttcattcggtgatgtgaaagatatggatggcaacactagcttgccaggcagcaga
tgtgggaccacagagaaatgtaagaccaaaataataatggacagctgtatgttagacaca
cctggaggaggtatcgtggaccaagggactatccagaaagggactccttatacaagggat
gcaaagagacaaaagatgttggattatggttcatctgcaactgttgtgatgggtaattgc
ctcactcaaaaagtcgactcttcctcaaatggtgcaatctccaactgcaatttggctgtg
aaacctgaagagcagccctgtattgctcagccaacaccagtctcaaattcatctgatctg
gaaagtgtttgtgccttctgtcattcctccaagttgactgatggaacgggtcccatattg
tactatgctaatcgaaaggaagtgtatggagaaaagtctgctctttccaatgttacacct
gttcatagcaaatgcatcgagtggacacctcgaatttattttgaaggggaaactataaaa
aatttggagtccgagttgggaagagctgctaagctcaaatgcagtagctgtgggcagaag
ggtgctgcacttggctgctttgccaagtcctgtcgcagaacttatcacatcccttgtgca
tttgcgattcaagagtgcagatgggattgtgaagatttcctaatgctgtgtccaagtcat
aactcttttaaattcccaagagagaaatcaaagtctcagaagtcttctactggattgaag
cacaacaccatgtccaatgaaatgctgtttacaaattcggagttttgggcaaccttgcct
tctggacgaaaagagtgggttttctgtggatctgctctgtcttcggaggagaagtttatt
cttgtcaagtttgctactatgtgtggtgctactgtatccaagctttgggaatcgaatgtc
acacatgtaatagcagcaacagataaaaagggtgcttgcaccaggacattgaaagttctg
atgggaatattgaatggaaagtggatccttacaatggattgggtaaaagcttgcacagaa
gcaaaacatcctgttaatgaagaaccttatgaagttaacttagacaaccatggatgtctc
aatggcccaaaaactggcagactaagggtctcaaataatgagccaaaactttttgatggc
ttgaaattttatttcagtggggattttgtgccagcttacaaaatcgacctgttggatctg
gttaggactgccggaggtaccatacttgagagtgcggaacagttaatggtacagagccac
gaacaaacaactttccacgaatgtttagttgtttataatagtgatgccacacgagcatgt
gcaatcgaagaagaaatttcagtcatttcacggaggttagaagaagctgctaatgcggcg
aaagaaactaattcacctgttgttcgacatacgtggattttggaatcaattgctgcatgc
aagttgctacctctgccttgttaa
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integrated database retrieval system
