Coffea arabica (coffee): 140038322
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Entry
140038322 CDS
T11342
Name
(RefSeq) polygalacturonase-like isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Module
carb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140038322
Enzymes [BR:
carb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
140038322
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
EutK_C
Motif
Other DBs
NCBI-GeneID:
140038322
NCBI-ProteinID:
XP_071939693
UniProt:
A0ABM4X6M6
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Position
3e:48118127..48137332
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AA seq
388 aa
AA seq
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MRFLAIPFLFLFFLLPSAESVTYNVQSYGAKSDGRSDSTNSFLSAWAAACASVAPATIYV
PPGRFLVGGASFWGQNCKNNAITIRIDGTLVAPSDYNVLGHSGNWLKFERVNGLSIYGGT
LDGQGTGLWACKNSGKHCPQGATSLGFYNSNKVLVSGLSSLNSQFFHIILDGCQNTRVEG
VKISAPENSPNTDGIHVQSSSGITITNSHIGTGDDCISLGPGCSNMWVENINCGPGHGIS
IGSLGSSVQEPGVKNVTVKTVTFSGTDNGLRIKTWAKPSNGFVAGVLFQHAVMINVQNPI
IIDQNYCPSGGKCPGQASGVRISDVTYQDVHGTSATEVAVNFDCSKNNPCSRITLEDVKL
SYKDQPAMASCINAGGSSSGLVEPKACL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgagatttctcgctatcccatttctcttccttttcttcctcttgccatcagctgagagt
gtaacgtacaatgtgcagagttacggggcgaaatctgacggaagaagtgattccacgaat
tcttttctgagtgcatgggctgcagcttgtgcctcagttgcgcctgcaacaatctatgtt
ccaccgggaagatttttggttggtggagcctcattttggggccaaaattgcaagaataat
gctataaccattcgcattgatggaacccttgttgctccatctgattataatgttcttgga
cattccggtaactggctcaagtttgaaagagttaatggactttcgatttacggtggaacc
cttgatggccaagggactggtctctgggcttgcaaaaactccggcaagcattgtcctcag
ggagcaacgtcattgggattctacaattcaaacaaagtcttggtcagtgggctaagttca
ttaaacagtcaatttttccatatcatcctcgatggctgccaaaacactagggtagaagga
gtaaagatttcagctccagaaaacagcccaaacactgatggaattcatgtccaatcatct
tctggcattacaattactaactctcacattggcactggtgatgattgcatatcattaggc
cccggatgctccaacatgtgggttgagaatatcaactgtggtcctggccatggaataagt
attggtagcctgggaagcagtgtgcaagaaccaggagttaaaaatgtgacagttaaaact
gttacattttcgggcacagataatggtctgaggataaaaacatgggcaaagcctagcaat
ggatttgttgccggagttctgtttcagcatgcagtaatgattaatgtccaaaacccaatc
ataatcgaccaaaattactgccccagtggcggcaagtgtcccggtcaggcctcaggcgtg
aggattagtgatgtgacataccaagatgtacatggaacatcagcaactgaagttgctgta
aattttgactgcagtaaaaacaatccatgcagccgcataactctggaagatgtcaaactt
tcctacaaggatcaaccagctatggcttcatgtatcaatgcaggcggatcttcatctggt
ttagttgagcccaaagcctgtttgtag
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