Carnobacterium sp. CP1: NY10_1421
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Entry
NY10_1421 CDS
T04230
Name
(GenBank) RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
carc
Carnobacterium sp. CP1
Pathway
carc02020
Two-component system
carc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NY10_1421
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NY10_1421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carc03021
]
NY10_1421
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
carc02035
]
NY10_1421
Transcription machinery [BR:
carc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NY10_1421
Bacterial motility proteins [BR:
carc02035
]
Flagellar system
Flagellar assembly proteins
Stator
NY10_1421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_Tnp_4
GerE
DUF1492
Motif
Other DBs
NCBI-ProteinID:
ALV22026
LinkDB
All DBs
Position
complement(1478191..1478907)
Genome browser
AA seq
238 aa
AA seq
DB search
MYYENDREKEIIKYLPLVEKVVSGLSIKRSDYDRDDLYNIGVIGLMDALEKFDKTKKVPF
EGYAYIRIKGTIIDEVRKTAPVSRTRLGQLNDYYRAKEKLEKTTMRTPTEQEICQELTIN
EKQLSKIHETVHHLASVSLEKVMFNEDGNDSELIDFLEDDRTVDTEEALTDKERQGLLTS
HISQLSEREQMILNMYYVDELTLKEIAFIFDISVPRVSQINGKTLLKLRESMRREYDD
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgtattatgaaaacgatagagaaaaagaaatcataaaatacctgcccttggtggaaaag
gtggtaagcgggctgagcatcaaacgcagtgattatgaccgcgatgacttgtataatatc
ggtgtgatcgggttaatggatgctcttgaaaaattcgataaaacaaaaaaagttcctttt
gaagggtatgcctatatcagaatcaaaggaaccattattgatgaagtcagaaaaacagca
ccggtttcaagaacgaggcttggtcaactgaacgactattatcgcgccaaagaaaaactt
gaaaaaacaactatgcggacaccgacagaacaagagatttgtcaggaactaacgatcaat
gaaaaacaactgtctaaaattcatgaaacggtccatcatttagcatctgtttcacttgaa
aaggtcatgttcaatgaggatggaaatgacagtgaattaatcgatttcctggaagacgat
cgtaccgttgatactgaagaagcactgacggacaaagagcgccaagggttgttaacgtca
catatcagtcagttatctgaacgagaacagatgattttgaatatgtattatgttgatgaa
ctaacactgaaagaaattgcttttatttttgatatatctgtgccgcgtgtttcgcaaatc
aatggaaagacgttactgaaactgagagaatcgatgaggagagaatacgatgattag
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