Carnobacterium sp. CP1: NY10_1685
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Entry
NY10_1685 CDS
T04230
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NY10_1685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carc03021
]
NY10_1685
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_1685
Enzymes [BR:
carc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NY10_1685
Transcription machinery [BR:
carc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NY10_1685
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NY10_1685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ALV22284
LinkDB
All DBs
Position
complement(1728196..1731819)
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPSKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIEPGNTPMEKKQLLTEREYRERRDQYGTEFQAEMGAEAIKQLLN
DVNLEKEVTELKEELKTAQGQKRTRAIRRLDILEAFRNSGNHPSWMVMDVIPIIPPEIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKMYQCGLPKQ
MAIELFKPFVMRELVARDIASNIKNAKRKIDRQDDAIWPVLEEVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMTFSSLNEALVAYQSGYVHLHSRIGIR
AIDIPNKPFTEWQKDKMMITTVGKLIFNEIMPGEFPYMNEPTQVNLEVATPDKYFVEAAT
DIPAHIKEQALIKPFKKKNLGNIIAEVFKRFKITETSKMLDRMKDLGYKYSTIAGITVGI
SDIVVLHEKQEMLDEAHGQVDNVTKQFRRGLITDDERYERVIAIWNAAKDRIQVKLMESL
DDRNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGQIMELPITSNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGLEVTAIKEGNEVIEPLE
ERLLGRYTRKTIFNPKDGSVIIKNNEIITEDIAKEIIDADIEQVTIRSVFTCNTKHGVCK
YCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARHPKGQAVITEVTGEVIAIEENPADRTKEITIKGVTDTRSYQIPFTSRMKVAEGDIVK
RGSSLIEGSVDPKQLLGVSDVLSVENYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVR
IMDPGETDVLPGTLIDIHDFTDENNRTLLAGGVPATARPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKRDPLLGLKENVIIGKIIPAGTGMPKYRKMEPKGVGVVSENVYSIN
DKKEPNI
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataattttgaaagtatgcaaattggtttggcctctccagataagatt
cgcagttggtcttatggagaagtcaaaaaacctgaaaccattaactatcgtacattgaaa
cctgaacgagatggtttattctgtgaacgtattttcggaccttcaaaagactgggaatgt
gcttgtggaaaatacaaacgaattcgttacaaaggcatcgtctgcgaccgttgtggagtt
gaagtaactcgttctaaagtacgtcgtgaacgtatgggtcatattgaattagcagcacca
gttactcacatttggtatttcaaagggattccaagccgtatgggacttgtgttagacatg
agcccacgtgctcttgaagaaatcatttatttcgcttcttacgttgttatcgaacctggt
aacacaccgatggaaaagaaacaattattgactgaaagagaataccgtgaacgtcgtgat
caatatggaacagaatttcaagctgaaatgggagcagaagccattaagcaattattgaac
gatgtaaatcttgaaaaagaagtgactgaattaaaagaagaattaaaaacagcacaaggc
caaaaacggacacgtgctattcgtcgcttggatattctagaagctttccgtaattctgga
aaccacccatcatggatggttatggatgttattccgattattcctccagaaattcgccca
atggttcaattagaaggcggacgctttgcgacaagtgatttaaatgacttgtaccgtcgt
gtaattaaccgtaacaaccgtttgaaacgtctactagatttaatggcaccgaatatcatt
gttcaaaatgaaaaacggatgttgcaagaagcagtcgatgctttgattgataatggtcgt
cgcggccgtccagttactggaccaggtaaccgtccattgaaatcattgtcacacatgcta
aaaggaaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactattcaggc
cgttcggttattgttgttggaccaacgcttaaaatgtaccaatgtggattgccgaaacaa
atggccattgaacttttcaaaccatttgtaatgagagaacttgttgcccgcgatatcgcc
agcaatatcaaaaacgcaaaacgcaaaatcgatcgtcaagacgatgctatctggcctgtc
ttggaagaagttatccgcgaacacccagttctattgaaccgggcaccaacattacacaga
ttaggaatccaagcttttgagcctgttcttgtagagggtaaagctattcgcttgcaccca
ttagtctgtgaagcttataacgccgacttcgatggagaccaaatggctgtccatgtaccg
ttaagtgaagaggcacaagctgaagcgcgtatgttgatgcttgctgctcaaaacattcta
aatccaaaagatggtaaaccagtagttactccttctcaagatatggtattggggaactat
taccttacaatggaagaagaaggacgcgaaggcgaaggaatgacattcagcagtttgaat
gaagcattggttgcttaccaaagcggctatgtgcatttacattcacggattggaatccgt
gcaatcgatattccgaacaaaccgtttactgaatggcaaaaagataaaatgatgatcacg
actgttgggaaattgattttcaatgaaatcatgcctggggaattcccatacatgaatgag
ccgactcaagtaaaccttgaggttgctacaccagacaaatactttgtcgaagcagcaacg
gatattccggctcacattaaagagcaagcgttgatcaaaccatttaagaagaaaaacctt
ggtaatattattgcagaagttttcaaacgtttcaaaataaccgaaacatcaaaaatgtta
gacagaatgaaagacttaggatacaaatattctactattgcagggattaccgtaggaatt
tcggatatcgttgtcttgcatgaaaaacaagagatgttagatgaagctcatggacaagta
gacaatgtaaccaaacaattccgtcgtggtttaattacggatgatgaacgttatgaacgt
gttattgctatctggaatgctgctaaagaccgtattcaagtgaaattgatggaaagttta
gatgaccgcaacccgatcttcatgatgagtgactcaggtgcccgtggtaacatctccaac
tttactcaactggctggtatgcgtggattgatggctgcaccgaatggacaaatcatggaa
ttaccgatcacatctaacttccgtgaaggactatcagttttagaaatgtttatctctacc
catggtgctcgtaaaggaatgaccgatacggctctgaaaacggctgactcgggttacttg
actcgtcgtttagtagacgtggcacaagatgttatcattcgtgaaacagattgtggaacg
gaccgtggtttagaagttactgctattaaagaaggcaatgaagtgattgaacctcttgag
gagcgtttgttaggtcgttatacacgtaaaacgatctttaatcctaaagacggatctgtt
atcatcaaaaataacgaaatcatcacagaagacattgcaaaagaaattatagacgcagat
attgaacaagttaccattcgttcagtatttacatgtaatactaaacatggtgtttgtaag
tattgttatggccgtaacttggctacaggttcagaagttgaagttggagaagcagttgga
acaattgcagctcaatcaattggagaaccaggaacccaattaaccatgcgtactttccat
acaggtggagttgccggagacgatattactcaaggtcttccacgtatccaagaaattttt
gaagctcgtcatcctaaaggacaagctgttatcactgaagtaaccggtgaagtcattgcg
attgaagaaaatccagcagatcgtacgaaagaaattacgatcaaaggagtaaccgatacg
cgtagttaccaaattccgtttacttcccgcatgaaagttgctgaaggcgacatcgttaaa
cgtggttcaagcttaattgaaggatcagtcgatcctaaacaactattaggtgtcagcgat
gttctttctgttgaaaactatctcttacgtgaagttcaaaaagtttaccgtatgcaaggg
gtagaaatcggcgacaaacatatcgaagttatggttcgtcaaatgttgcggaaagttcgt
atcatggatccaggtgaaacagacgtcttgccaggaacgttgatcgacatccatgatttc
acagacgaaaataaccgtacgctattagccggcggtgttccagcgacagctcgtccagtt
ttacttggaattactaaagcttctcttgaaacaaatagtttcttgtcagctgcttccttc
caagagacgacacgtgtcttaacagatgctgctattcgcggaaaacgtgatccgttatta
ggattgaaagaaaacgtcattatcggaaaaatcattccagctggtacaggaatgccgaaa
tatcgtaaaatggaaccaaaaggagttggcgttgtgagcgagaatgtttacagcatcaat
gacaaaaaggaaccgaatatataa
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integrated database retrieval system
