Carnobacterium sp. CP1: NY10_1911
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Entry
NY10_1911 CDS
T04230
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03030
DNA replication
carc03430
Mismatch repair
carc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NY10_1911
03430 Mismatch repair
NY10_1911
03440 Homologous recombination
NY10_1911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carc03032
]
NY10_1911
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_1911
Enzymes [BR:
carc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NY10_1911
DNA replication proteins [BR:
carc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NY10_1911
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NY10_1911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
DNA_pol3_gamma3
RuvB_N
AAA_22
AAA_30
AAA_5
AAA_19
AAA_assoc_2
DnaX_C
DUF815
AAA_14
TIP49
AAA_24
AAA_7
PIF1
Rad17
AAA_16
Mg_chelatase
Zot
Motif
Other DBs
NCBI-ProteinID:
ALV22500
UniProt:
A0A0U3P612
LinkDB
All DBs
Position
1986378..1988249
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AA seq
623 aa
AA seq
DB search
MSYQALYRVWRPQRFQDIAGQKAITQTLRNALIQGKTSHAYLFTGPRGTGKTSGAKIFAK
AINCHYLKDGEPCNECETCVAITQGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTIADY
KIYIIDEVHMLSTGAFNALLKTLEEPPKNVVFILATTEPHKIPLTIISRTQRFDFKRISV
RDICDRMIYILNQEKIGFEEEALPVIARAAEGGMRDALSILDQAISYGDSVVTIEHAMSV
TGSLTQELMLAYFDAIVTRNTEKGLSLLQEILADGKDASRFVEDLILFSRDILVYQQAPQ
MSDLLDGATVDTGFKGLSETISANLLYQMITILNGTQNELRFTNHPDVYLEVATVKLTQL
NPNPAASVVEPKAAAATPVEAAPDQGKMANLENELMQMKKQLQSIAANGGAQQPVKKAKR
AATKATGNQFTPNTPAIYGVLKEATKENLNQLRDVWPDLLNMLSVTQRAMLKASTPVAAS
PNGLIVSFDYDILCQKATNDTELLAAVTEYLRRLVGYEPQMICVPAEQWPVIRGQYVQQL
KGQPSVKKAPVQQSANPTGQAPQSTTQQQENGAADQKKRPAEADSSEWDSLEGIIPPTEE
EDNTVVTEAMNLFGKTIVEVRND
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
ttgagttatcaagcactttatcgagtatggcggcctcaacgttttcaagacattgccgga
caaaaagccattacacagacattaagaaatgccctgatccaagggaagacaagtcatgct
tatctctttacaggccctcgtggaaccgggaaaaccagtggggctaaaatatttgccaag
gccatcaactgccattatttgaaagatggcgaaccgtgtaacgaatgtgaaacgtgcgtt
gccattactcaaggacagttaaacgatgtgatcgaaattgatgcggccagtaataatggg
gtcgaagaaattcgagatatccgtgacaaggccaaatacgcacccactattgcagattat
aaaatctacattattgatgaagttcatatgttgtcaacgggagcttttaatgcgttactg
aaaacattggaagaaccacctaaaaatgttgtctttattttagcaacaactgaaccgcat
aaaattccgttgaccattatttcgaggacccagcgctttgattttaaacgcatttctgtg
cgagacatttgcgatcggatgatctatattttaaaccaagaaaaaatcggttttgaagaa
gaagctttaccggttattgcacgtgcagcagaaggcggaatgcgtgatgcattaagcatt
ttagatcaggcgatctcttatggcgatagtgtggtcacaatcgagcacgctatgagtgtg
acaggcagcttgacgcaagaattgatgttggcttactttgatgccattgtaacgcgcaat
acagaaaaaggcttatcgttgctgcaagagattttggcagatgggaaagatgcttcacgt
tttgttgaagatctgattttattcagccgagacatcctcgtctaccaacaagctcctcaa
atgagcgacttattggacggagcgacagttgataccgggtttaaagggttaagtgaaacc
atttcagccaatttgctgtatcaaatgatcacgattttaaatggtacgcaaaatgaactg
cgttttaccaatcatccagatgtttatttagaagttgcaacagtcaaactaacccaattg
aatccaaatccagcagcttcggttgtagaacctaaagcagcagctgcaacaccagttgaa
gctgcgcccgatcaaggaaagatggccaatcttgaaaatgaattgatgcaaatgaaaaaa
caattgcagtcgatagcagctaatggcggagctcaacagcctgttaaaaaagcgaaaaga
gccgcaacgaaagcaaccggcaatcaatttactccgaatacaccggccatttatggtgtc
ttaaaagaagccactaaagaaaatctgaaccagcttcgagatgtctggccggatttattg
aatatgttgtccgtcactcagcgcgctatgctaaaagcttcaacaccagttgccgctagt
ccgaacggcttgatcgtttcgtttgattacgatatattatgtcaaaaagcgacgaatgac
acggaactattagcggctgttacagagtatttgcgtcggttagttggatatgaaccgcaa
atgatttgtgtgccagctgaacaatggccggtcattagagggcaatacgttcaacaatta
aaaggccagccgtccgttaaaaaagcgccggtacagcaatctgctaacccaaccggtcaa
gcacctcaatcgaccacacagcagcaagaaaacggtgctgctgatcagaaaaaaaggcct
gcagaagctgactcttctgagtgggatagtttagaaggcatcattccgccaacagaggaa
gaagacaacactgtggtgacggaagcaatgaatctatttggcaaaacgattgttgaagta
agaaatgattga
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