Carnobacterium sp. CP1: NY10_2003
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Entry
NY10_2003 CDS
T04230
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NY10_2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carc03021
]
NY10_2003
03019 Messenger RNA biogenesis [BR:
carc03019
]
NY10_2003
Transcription machinery [BR:
carc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NY10_2003
Messenger RNA biogenesis [BR:
carc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NY10_2003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
NACHT
AAA_25
OB_RNB
AAA_22
Spore_III_AA
NB-ARC
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ALV22592
LinkDB
All DBs
Position
2080708..2082003
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AA seq
431 aa
AA seq
DB search
MSEILTLEQLEEKTLKEIYNYAKELKIPYYSQMNKKELSLAVIRAQEEKQGFFMAEGVLD
IMAQQDFGFLRPINYTASKEDIYISASQIKRFGLRNGDKVSGKARPPKPSERYYGLMHVS
KVNGKAPEEAKERSHFPALTPLYPDRQMVLETEKMKISNRMIDIVAPVGFGQRGLIVAPP
KAGKTTLLKEIANGIAENHPEAELIVLLIDERPEEVTDIERSVKGEVVSSTFDQQPQNHV
RVTELVLERAMRLVEDKRDVIILMDSLTRLARAYNLVVPASGRTLSGGIDPAALHRPKRF
FGAARNIEEGGSLTILATALVDTGSRMDDIIYEEFKGTGNSELHLSRELAERRIFPAIDI
KKSGTRKEELLLPGNRLEEIWKLRHAMVGDALEFTDQFIKILRNSDNNQAFFNSFSEKAF
TQTKNTRNARR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaatactaaccctagagcaattagaagagaagactttaaaagaaatatacaac
tacgccaaagaattgaaaattccttattacagccaaatgaataaaaaagaattatcgtta
gctgtgattcgggcacaagaagaaaagcaaggattttttatggcagaaggcgttttagat
atcatggcccaacaagacttcggttttttgcgtccgatcaactatacggctagtaaagaa
gatatttacatttctgcttcacaaatcaaacgatttggtttgagaaacggcgataaagtt
tctggtaaagccagaccgcccaaaccatctgaacggtattatggtttaatgcacgtcagt
aaagtaaatggaaaagctccggaagaagcaaaagaacggtcgcattttccggcattgact
ccgctttatccagaccgccaaatggtgttagaaactgaaaaaatgaagatttctaatcga
atgatcgacattgtggctcctgttggattcggacaacgtgggttgatcgttgctccgcct
aaagctggtaaaaccacgctattaaaagaaatcgcaaacggtattgctgaaaatcatccg
gaagctgaattgatcgtcttgttgatcgatgagcgtccagaagaagtgacggatattgaa
cgcagcgtaaaaggcgaagttgtttcttcaacatttgatcagcaaccgcaaaatcacgta
cgggtcactgaattggttttagaaagagcgatgcgtttagtagaagacaaacgcgatgtg
attattttgatggacagtcttactcgattagctcgtgcctataacttagtggtccctgct
agcggccggacattaagtggggggatcgatccagcggctttgcatcgtcctaaacgattc
ttcggtgctgcacggaatattgaagaaggcggcagtttgacgatattagctacagcttta
gttgataccggcagccggatggatgacattatttatgaagagtttaaaggaaccgggaat
tcagagctgcacttgtcaagagaattagctgaacgccgaatttttcctgctattgatatc
aaaaaatcaggtacgcgaaaagaagaattgttattgccgggcaaccgcttagaagaaatt
tggaaattgcgacatgcaatggtcggcgatgccttagaattcacggatcaattcatcaaa
atattgcgtaattctgataacaatcaagcgtttttcaatagtttttcagaaaaagccttt
acccaaactaaaaatacgcgtaatgcgcgcagataa
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