Carnobacterium sp. CP1: NY10_23
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Entry
NY10_23 CDS
T04230
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NY10_23
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_23
Enzymes [BR:
carc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NY10_23
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NY10_23
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NY10_23
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALV20656
UniProt:
A0A0U3DUR7
LinkDB
All DBs
Position
10140..10964
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AA seq
274 aa
AA seq
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MPELPEVETVRKGLAQLVEGRTIVGVDVYWDRIISGPIHSEEFANQLIGEKLVGFERRGK
YLIFLFTHWAMVSHLRMEGKYEVEAKETPLKKHTHVVFHLDDGWDLRYLDVRKFGRMTLV
PLGEQESVAGLKTLGPEPVPETFKLASFQKTLKQKTRAIKPLLLDQKVVAGLGNIYVDEA
LFKAKIHPLRPANTLKLSETKRLHEAIIQVLGEAVEAGGTTIRTYKNALGEAGSFQVKLH
VYGKTNEPCIYCGTPIQKLKVAQRGTHICPSCQK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
ttgccagaattaccagaagtggaaacggtcagaaaaggtttggcccaacttgtcgaaggc
aggaccattgtaggggttgatgtatattgggaccggattatttctggacccattcacagt
gaagaatttgcaaaccagctgattggagaaaagttggttggtttcgaacgaagagggaaa
tacttgatttttctcttcactcactgggcgatggtatcccatttacggatggaagggaaa
tacgaagtagaagcgaaagaaactccgctaaagaaacacactcatgtggtctttcattta
gatgatggctgggacctgcgttacctggatgttcggaaatttggccgaatgactcttgtt
ccattaggagaacaagaaagtgttgctggtttgaaaacattaggtcctgagcctgtacca
gaaacgtttaagcttgcttcttttcaaaaaacactcaaacaaaaaacgcgggcaatcaag
cctttgttgttagaccaaaaagttgtagcagggttaggaaatatctacgtagacgaagcc
ctttttaaagctaaaatccacccgctaagaccggctaataccttaaaactatcagaaacc
aaacgcctccacgaagcaatcatacaagtgctaggggaagctgtggaagctggcgggact
actattagaacttataaaaatgctctaggagaagccggtagtttccaagtgaagctgcat
gtttacggaaagacaaatgaaccctgcatttactgtggaacacctattcaaaagttgaaa
gtggctcaaagaggcacccacatttgcccgagctgtcaaaagtaa
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