Carnobacterium sp. CP1: NY10_376
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Entry
NY10_376 CDS
T04230
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NY10_376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carc03019
]
NY10_376
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_376
Enzymes [BR:
carc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NY10_376
Messenger RNA biogenesis [BR:
carc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NY10_376
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NY10_376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ALV20996
UniProt:
A0A0U3P1Z0
LinkDB
All DBs
Position
338044..339489
Genome browser
AA seq
481 aa
AA seq
DB search
MTNQEKIKELLGSHFGYTSFREGQEEAILAALSGEDTLVMLPTGTGKSICYQLTGYCLKG
IVLIVSPLLSLMQDQVEQLKMFGEKRVAAINSLMDIKEKEWVLNHLNQYKFIFLSPEMLQ
QPLLLERFKQLEIGLMAIDEAHCISQWGMDFRLDYLELGTIRKTLNYPLTMALTATATET
VRQEILDSLLLDKDKTKQIVYSVDRPNIAFSVVACRRNKEKKLLEKIEQLKKPGIIYFSS
KKKADEVTAWLKVETPFAVESYHSDIEGDDKIKIQQQFIQNDIDIICATSAFGMGINKEN
IRFVIHYHLPASMEAYLQEVGRCGRDGRPSIAILLYEPGDQFLQMRLHEDGLPTPAMLNY
AYRNGTVFDGSCSTIQQEIIENYLSSKTPLEEAKAQIMSRELQKKRQLDYMVQYAETTSC
KRTHILYYFDETRIEKPLNCCSNCGLDESVYSADQDEFLRNKATTFLNWKKTLNELFLLE
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttgactaatcaagaaaaaatcaaagaattgcttgggagtcattttggatatacttccttt
cgtgaaggccaagaagaagccatattagccgctttatcaggagaagacacacttgtgatg
ctgccgacaggaacaggcaaatccatttgttaccaactaaccggttattgcttaaaagga
atcgtgctgattgtttctccgctcttatctttaatgcaagaccaagtagaacaattaaaa
atgtttggtgaaaaaagagttgcggctatcaatagtttaatggatataaaagagaaagag
tgggttttaaatcatttaaatcagtataaattcatttttctttcgccggaaatgctgcag
cagcctttgttattggagcggtttaaacagttggaaattgggttgatggcgatcgatgaa
gcccattgtatttcacagtgggggatggatttccgtttagattatttagaactgggaacg
attcgaaaaacattgaactatccgctgacaatggcgttaacagcaacagcaacagaaacc
gtccggcaagaaatactcgattcgctgttgctggataaagataaaaccaaacaaatagtg
tactctgttgatcgtcctaatattgctttttctgttgttgcgtgtcgtcgcaataaagaa
aagaaactgctggaaaaaattgaacagctaaaaaaaccaggaatcatttatttttcaagc
aaaaaaaaagccgatgaagttacggcttggcttaaagtggaaacgccgtttgcagtagaa
agttatcattctgatatcgaaggggatgataaaattaaaattcagcaacagtttattcaa
aatgatattgacattatttgtgcgacgagtgcttttggtatgggaatcaataaagaaaat
attcgttttgttatccactatcatttgccggctagcatggaagcttatcttcaagaggta
ggcaggtgtggacgtgacgggaggccaagtatcgccatcctactttatgaaccaggcgat
caatttttacaaatgcgcttacatgaagatggtttaccaacgccagctatgttaaactat
gcttatcgcaatggaactgtttttgatggcagttgcagtacgattcaacaagaaattatt
gaaaactatctttcttctaagactcctcttgaagaagctaaggcccaaataatgagccgc
gagctgcaaaagaaaaggcaacttgactatatggttcaatatgctgaaacaacttcatgc
aaaagaactcatatactctattatttcgatgagaccaggatagaaaagcctttaaactgc
tgttctaattgtggtttagatgaaagtgtctattcggctgatcaagatgagttccttaga
aataaggcaaccacatttttaaattggaaaaagaccttgaatgaactgtttttattagag
aattaa
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