Carnobacterium sp. CP1: NY10_516
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Entry
NY10_516 CDS
T04230
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03410
Base excision repair
carc03430
Mismatch repair
carc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NY10_516
03430 Mismatch repair
NY10_516
03440 Homologous recombination
NY10_516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_516
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NY10_516
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NY10_516
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NY10_516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ALV21134
UniProt:
A0A0U3MAZ4
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Position
455671..458004
Genome browser
AA seq
777 aa
AA seq
DB search
MLKAHTKWKVKETMMDKEHEKELSRKLGFTSLFTTLCLQRGLETEEEIQHFLKPDETWIH
DPFLMHDMDKAVSRIMEAIEKGELITIYGDYDADGVTSTAVLKEAIEMIGGEVNFYIPNR
FSDGYGPNTQAFEKLIEAGTGLIVTCDNGVSGHEAIAKANELGIDVVITDHHELPAILPA
AYAIVHPRHPNGHYPFKDLAGVGVAFKLATALLGEVPLELLDLVAVGTVADLVSLLGENR
ALVMQGIAVLRESQRVGLAALCKVAGAKQSEVDEETIGFILAPRLNAIGRLGEAAPAVEL
LTTFDEAEANSLAQLINEKNKERQALVSTITAEAFDMIEKSDANPHVYVLAKEGWHEGVL
GIVASKVVGKTGKPAIVLNMDRTNGTAKGSGRSVSAYHLYEALEDVSHLTTNFGGHHMAA
GLTLPVENIGAIQTELNAFLLQSGLAEQLTEEIVVDERLTIAESSVESIEELQKLAPFGT
DNPKPVFLFENVKAQDVRRIGGDNAHLKLKIMDEAASLDVIGFQFGPVAAEIGADAELSI
VGQLSINEWNGLRKPQLMIEDLAIEGVQVFDLRSTQIAPAIWQMAPADYLFFNEKNYQQY
ESSITETSYGHLITDQESAEGFILHTDQLILVDCPSDLTLLSTVLNQVEPTKVVACFFNQ
EEAYLTGIPSRMQFSQVFKYTATHIDIDVRHKISLLATHLKIKEKLLIFMISVFFEVGFV
TIKDGVMNIVPNAEKKELTESTTYQNRLKKIAAEEALIYSRFTELETWLKQQLKKEL
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaaagcacatacaaaatggaaagtaaaagaaacgatgatggacaaagaacatgaa
aaagaattgagccggaaattaggtttcacatcattatttacgactttgtgtttacaaagg
ggcttagagacagaagaagaaatccagcattttttgaagcccgatgagacgtggattcat
gatccttttctcatgcacgatatggataaagccgtttcccgtattatggaagcaattgaa
aaaggtgagctgatcactatttatggcgactatgatgcggatggtgtcacaagtacggcc
gttttgaaagaagccatcgaaatgattggcggagaagtaaatttttatattccaaatcga
tttagcgacggttacggtccgaatactcaggcgtttgaaaaattgattgaagctggaact
gggttgatcgttacctgtgacaatggtgtttcaggacatgaggcgattgctaaagccaat
gagttaggaattgatgtagtcataaccgaccatcatgaattgcctgcaatcttgccagcg
gcttatgcaattgttcatccccgtcatccaaatggccactatccatttaaagatttggca
ggagtaggagtagcgtttaagctggcgactgctttactgggtgaagttccacttgaatta
ctcgatttagtagctgttggtaccgtggcggatttagtttctttattaggagaaaaccgg
gctttggtcatgcaaggaatagctgttttaagagaatcgcaaagagtgggtttagctgct
ttatgcaaggtggctggagccaagcaatcagaagtagatgaagagacgattggctttatt
ttagcccctcggttgaatgcgattgggcgtttaggcgaggctgctcctgctgtagaattg
ttgacgacattcgatgaggccgaagcgaattctttagcccagttaattaatgagaaaaat
aaagaacgacaagccttggtttcaaccatcacagctgaagcttttgatatgattgaaaaa
agcgatgcgaacccgcatgtgtatgtattagcaaaagaaggctggcatgaaggagtttta
ggaatcgtggccagcaaagtggttggcaagactggaaaaccagccattgtattgaatatg
gataggacgaatgggacagctaaagggtcaggacgaagcgtgtcagcttaccatctgtat
gaagcattagaagatgtcagtcacctgacgacgaattttggcggacaccatatggcagca
ggtttgacactgcctgtcgagaatattggtgcgattcaaacagaactcaatgctttctta
ctgcaaagcggtttagctgagcagttaacggaagaaatcgtagttgatgaacggttgacc
atagctgagagtagcgtggaatcaatcgaagagctgcaaaagcttgctccttttggaacg
gataatcctaaaccggtctttttattcgaaaatgtaaaagcacaagatgttcgacgtatc
ggcggagataatgcacatttgaaattaaaaataatggatgaagcagcatctttagatgtg
attggttttcaattcggccctgttgcagctgagattggtgctgatgctgaactatcgatt
gtgggacagttaagcatcaatgaatggaatgggttgcgtaagcctcagttgatgattgaa
gatttggcaattgagggagtgcaagtttttgatttgagaagtactcaaatcgctccagca
atttggcagatggcacctgctgattatttatttttcaatgaaaaaaactatcaacaatat
gaaagcagcatcactgagacaagttacggtcatttgatcactgatcaagaaagtgccgag
ggttttatcctgcacacggatcaacttattttagttgattgcccctcagatttaacttta
ttaagcactgtattgaatcaggtagagccaacaaaggttgtggcttgtttctttaaccaa
gaagaagcttatcttactggaatacctagtcggatgcaattttcacaagtttttaagtat
actgcaactcatattgatattgatgttcgtcataaaataagtttattagcaacgcatttg
aaaataaaagaaaaactattgatttttatgatttctgtgttttttgaagtaggatttgtt
acaataaaagacggtgttatgaatattgttccaaatgctgaaaagaaagagttgactgaa
tcgactacttatcaaaaccgtttgaaaaaaatagcagctgaagaagctttgatctatagt
cggtttactgaactagaaacttggttaaaacaacagttgaaaaaagaactgtaa
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